RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 PLPP1O14494 284 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 TNFSF14O43557 240 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 GBAP04062 536 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 PSPHP78330 225 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 UGT8Q16880 541 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 ZNF658BQ4V348 819 aaPredicted RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 PTRH1Q86Y79 214 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 PEX5LQ8IYB4 626 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 ZNF595Q8IYB9 648 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 CCL4L1Q8NHW4 92 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 XAGE5Q8WWM1 108 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 TM4SF18Q96CE8 201 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 RBM4BQ9BQ04 359 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 GPATCH1Q9BRR8 931 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 RBM4Q9BWF3 364 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 PCDHAC1Q9H158 963 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 PTGFRNQ9P2B2 879 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 FTSJ1Q9UET6 329 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 OR10H1Q9Y4A9 318 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 FAM47E-STBD1D6RA91 191 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 RTCAO00442 366 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 AP3D1O14617 1153 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 CLOCKO15516 846 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 MATN1P21941 496 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 CERS1P27544 350 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 NUBP1P53384 320 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 PMS2CLQ68D20 193 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 CEACAM20Q6UY09 585 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 OR5K1Q8NHB7 308 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 PNPT1Q8TCS8 783 aaKnown RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 CYGBQ8WWM9 190 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 MVB12AQ96EY5 273 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 ZNF578Q96N58 590 aaPredicted RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 TMEM74Q96NL1 305 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 DPH2Q9BQC3 489 aaPredicted RBP7.95□□□□□ -1.14
USP54-215ENST00000497106 GAREM1Q9H706 876 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 ARMC1Q9NVT9 282 aa7.95□□□□□ -1.14
USP54-215ENST00000497106 TOX3O15405 576 aaPredicted RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 KLHL18O94889 574 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ALPPP05187 535 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ENDOUP21128 410 aaKnown RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 CCNIQ14094 377 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ZNF425Q6IV72 752 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TMEM64Q6YI46 380 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 STK32CQ86UX6 486 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ARMC8Q8IUR7 673 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 FBXL6Q8N531 539 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 DHRSXQ8N5I4 330 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CHID1Q9BWS9 393 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CD248Q9HCU0 757 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 SPHK1Q9NYA1 384 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 IFT52Q9Y366 437 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 PROM1O43490 865 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 PNLIPP16233 465 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 EPHA8P29322 1005 aaPredicted RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 KIAA0040Q15053 153 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 RGNQ15493 299 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TRIM61Q5EBN2 209 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 PHF19Q5T6S3 580 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ANKRD26P1Q6NSI1 321 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 RETREG3Q86VR2 466 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CDK20Q8IZL9 346 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 NAGSQ8N159 534 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 COX18Q8N8Q8 333 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ATG16L2Q8NAA4 619 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 LINC01555Q8NAE3 123 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 MMABQ96EY8 250 aaPredicted RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 MS4A4EQ96PG1 132 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 APOL4Q9BPW4 351 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 KLHL25Q9H0H3 589 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CNOT11Q9UKZ1 510 aaKnown RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 SNX5Q9Y5X3 404 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 NOTCH4Q99466 2003 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 A0A1B0GTL3 188 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 SNTNA6NMZ2 147 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 KLK3P07288 261 aaPredicted RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 BMP1P13497 986 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CD22P20273 847 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 BSGP35613 385 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 EMP3P54852 163 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 MLC1Q15049 377 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TMEM164Q5U3C3 297 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 RNF44Q7L0R7 432 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 RNF130Q86XS8 419 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 FAM156AQ8NDB6 213 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 ZNF740Q8NDX6 193 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 UTP4Q969X6 686 aaKnown RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 RDH12Q96NR8 316 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 OR2A14Q96R47 310 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 NR1H4Q96RI1 486 aaPredicted RBP7.94□□□□□ -1.14
USP54-215ENST00000497106 MMACHCQ9Y4U1 282 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CCL27Q9Y4X3 112 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 PCDHGA5Q9Y5G8 931 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 A0A1W2PR77 199 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TIPRLO75663 272 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TACR1P25103 407 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 CTSKP43235 329 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 RANBP1P43487 201 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TMED1Q13445 227 aa7.94□□□□□ -1.14
USP54-215ENST00000497106 TOP3AQ13472 1001 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms