RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RNF175Q8N4F7 328 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 RBMXL3Q8N7X1 1067 aaKnown RBP15.35■□□□□ 0.05
SF3A1-209ENST00000496189 CDYL2Q8N8U2 506 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 GATA5Q9BWX5 397 aaPredicted RBP15.35■□□□□ 0.05
SF3A1-209ENST00000496189 TRIM4Q9C037 500 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.35■□□□□ 0.05
SF3A1-209ENST00000496189 BRF2Q9HAW0 419 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 ADAP2Q9NPF8 381 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 NECTIN3Q9NQS3 549 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 NKIRAS1Q9NYS0 192 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 STMN3Q9NZ72 180 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 SLC12A4Q9UP95 1085 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 CLCA3PQ9Y6N3 262 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 CFAP46Q8IYW2 2715 aa15.35■□□□□ 0.05
SF3A1-209ENST00000496189 ZNF462Q96JM2 2506 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 IGKV3D-11A0A0A0MRZ8 115 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 A8MUA0 341 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 CYR61O00622 381 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 NPHS1O60500 1241 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 ULK1O75385 1050 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 HSD3B1P14060 373 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 TNNI3P19429 210 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 HSD3B2P26439 372 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 SOX11P35716 441 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 ETV4P43268 484 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 SLC18A1P54219 525 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 MEP1AQ16819 746 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 COLEC12Q5KU26 742 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 HHATQ5VTY9 493 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 CLNKQ7Z7G1 428 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 SHISA5Q8N114 240 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 CPT1CQ8TCG5 803 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 AGAP11Q8TF27 550 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 TANKQ92844 425 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 DAZLQ92904 295 aaKnown RBP15.34■□□□□ 0.05
SF3A1-209ENST00000496189 TLCD1Q96CP7 247 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 CSF3RQ99062 836 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 RPF2Q9H7B2 306 aaKnown RBP15.34■□□□□ 0.05
SF3A1-209ENST00000496189 KCMF1Q9P0J7 381 aa15.34■□□□□ 0.05
SF3A1-209ENST00000496189 TMEM120BA0PK00 339 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 MANBAO00462 879 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 VPS4BO75351 444 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 MYO1DO94832 1006 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 PDYNP01213 254 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 CELA2AP08217 269 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 FAM58BPP0C7Q3 252 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 CLCN2P51788 898 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 MLLT10P55197 1068 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 TNFRSF17Q02223 184 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 GALNT1Q10472 559 aaPredicted RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 CSTF3Q12996 717 aaKnown RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ZNF169Q14929 603 aaPredicted RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ELAVL1Q15717 326 aaKnown RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 B3GNTL1Q67FW5 361 aaPredicted RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 Q6ZS92 163 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 GBP7Q8N8V2 638 aaPredicted RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ANKRD42Q8N9B4 389 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ATP6V1G3Q96LB4 118 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 PAIP2Q9BPZ3 127 aaKnown RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 MECRQ9BV79 373 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ALOXE3Q9BYJ1 711 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 DEFB126Q9BYW3 111 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 DDX31Q9H8H2 851 aaKnown RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ZBTB20Q9HC78 741 aaPredicted RBP15.33■□□□□ 0.04
SF3A1-209ENST00000496189 LUZP4Q9P127 313 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 ADAM29Q9UKF5 820 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 VPS4AQ9UN37 437 aa15.33■□□□□ 0.04
SF3A1-209ENST00000496189 TRAV17A0A0B4J275 112 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 A0A1B0GTL3 188 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 FCHO1O14526 889 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 SORBS2O94875 1100 aaKnown RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 CHEK2O96017 543 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 NR2F6P10588 404 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 UROSP10746 265 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 BSGP35613 385 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 PLIN5Q00G26 463 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 PLEKHN1Q494U1 663 aaPredicted RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 ACER2Q5QJU3 275 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 CCNYL2Q5T2Q4 361 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 HORMAD2Q8N7B1 307 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 B3GNT7Q8NFL0 401 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 OR14A16Q8NHC5 309 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 PSMF1Q92530 271 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 HAS2Q92819 552 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 VMP1Q96GC9 406 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 RBM18Q96H35 190 aaKnown RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 DGAT2Q96PD7 388 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 PELOQ9BRX2 385 aaKnown RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 SORBS1Q9BX66 1292 aaKnown RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 MRPL1Q9BYD6 325 aaKnown RBP15.32■□□□□ 0.04
SF3A1-209ENST00000496189 RNF32Q9H0A6 362 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 AGPAT4Q9NRZ5 378 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 VPS29Q9UBQ0 182 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 COPS7AQ9UBW8 275 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 ZNF225Q9UK10 706 aa15.32■□□□□ 0.04
SF3A1-209ENST00000496189 BSNQ9UPA5 3926 aa15.31■□□□□ 0.04
SF3A1-209ENST00000496189 A0A0A6YYD5 115 aa15.31■□□□□ 0.04
SF3A1-209ENST00000496189 WDR91A4D1P6 747 aa15.31■□□□□ 0.04
SF3A1-209ENST00000496189 OR5H15A6NDH6 313 aa15.31■□□□□ 0.04
SF3A1-209ENST00000496189 HMGB1P1B2RPK0 211 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms