RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 HDHD5Q9BXW7 423 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 ZCCHC2Q9C0B9 1178 aaKnown RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 MMP28Q9H239 520 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 MAT2BQ9NZL9 334 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 KLHL3Q9UH77 587 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 NTNG1Q9Y2I2 539 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 A0A1W2PS29 197 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 ANKRD33BA6NCL7 494 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 TLR4O00206 839 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 PDPK1O15530 556 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 PRKNO60260 465 aaPredicted RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 SELENOWP63302 87 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 UBE2UQ5VVX9 321 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 TMEM107Q6UX40 140 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 CCBE1Q6UXH8 406 aaPredicted RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 HSDL2Q6YN16 418 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 FAM83HQ6ZRV2 1179 aaPredicted RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 C16orf62Q7Z3J2 963 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 AKAP14Q86UN6 197 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 DUS3LQ96G46 650 aaKnown RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 TM9SF2Q99805 663 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 CXorf36Q9H7Y0 433 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 SLC23A2Q9UGH3 650 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 PCDHGA6Q9Y5G7 932 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 ZSWIM8A7E2V4 1837 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 NUAK1O60285 661 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 CLTBP09497 229 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 CLEC2LP0C7M8 214 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 NPPBP16860 134 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 MYL12AP19105 171 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 GRK5P34947 590 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 SRP54P61011 504 aaKnown RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 TAP2Q03519 686 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 ZNF730Q6ZMV8 503 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 ZBTB8BQ8NAP8 495 aaPredicted RBP12.83□□□□□ -0.36
GPC1-209ENST00000495100 REPS1Q96D71 796 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 C16orf58Q96GQ5 468 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 RDH12Q96NR8 316 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 TTYH2Q9BSA4 534 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 C1QTNF3Q9BXJ4 246 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 TMEM9Q9P0T7 183 aa12.83□□□□□ -0.36
GPC1-209ENST00000495100 MRPL3P09001 348 aaKnown RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 CCDC159P0C7I6 412 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PIK3CBP42338 1070 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 SLC35A2P78381 396 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 HYAL4Q2M3T9 481 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PLEKHS1Q5SXH7 462 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CBLL1Q75N03 491 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 ADIPOR2Q86V24 386 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 TSPYL5Q86VY4 417 aaPredicted RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 CYP4Z2PQ8N1L4 340 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 OR51L1Q8NGJ5 315 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 SLC38A4Q969I6 547 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 ZNF300Q96RE9 604 aaPredicted RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 GAL3ST1Q99999 423 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 ASPNQ9BXN1 380 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 AHSPQ9NZD4 102 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CLCA3PQ9Y6N3 262 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CLDN24A6NM45 220 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CASKO14936 926 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PLOD3O60568 738 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 SOX30O94993 753 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 KRT75O95678 551 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 NOS3P29474 1203 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 HOXA9P31269 272 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PNLIPRP1P54315 467 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 WNT3P56703 355 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 C1DQ13901 141 aaKnown RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 ZMAT1Q5H9K5 638 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 ATAT1Q5SQI0 421 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CCNJQ5T5M9 372 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CNKSR3Q6P9H4 555 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 VITQ6UXI7 678 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 ASB18Q6ZVZ8 466 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 HDDC3Q8N4P3 179 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PAPD5Q8NDF8 572 aaKnown RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 YTHDF1Q9BYJ9 559 aaKnown RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 HDHD2Q9H0R4 259 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 DOCK9Q9BZ29 2069 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PITPNM1O00562 1244 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 NCR1O76036 304 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 C1orf105O95561 183 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CBSLP0DN79 551 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PEPDP12955 493 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 CBSP35520 551 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 GPR4P46093 362 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 LIPJQ5W064 366 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 STEAP3Q658P3 488 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 HTR3DQ70Z44 454 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 MTSS1LQ765P7 747 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PHF21AQ96BD5 680 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 HCN4Q9Y3Q4 1203 aa12.82□□□□□ -0.36
GPC1-209ENST00000495100 PCYT1BQ9Y5K3 369 aaPredicted RBP12.82□□□□□ -0.36
GPC1-209ENST00000495100 MID1O15344 667 aa12.81□□□□□ -0.36
GPC1-209ENST00000495100 WBP4O75554 376 aaKnown RBP12.81□□□□□ -0.36
GPC1-209ENST00000495100 RB1P06400 928 aa12.81□□□□□ -0.36
GPC1-209ENST00000495100 GINS1Q14691 196 aa12.81□□□□□ -0.36
GPC1-209ENST00000495100 SPIN4Q56A73 249 aa12.81□□□□□ -0.36
GPC1-209ENST00000495100 KHDRBS2Q5VWX1 349 aaKnown RBP12.81□□□□□ -0.36
GPC1-209ENST00000495100 FAM92BQ6ZTR7 304 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms