RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 LAMP5Q9UJQ1 280 aa18.39■□□□□ 0.53
COL27A1-207ENST00000494090 CICQ96RK0 1608 aaPredicted RBP18.39■□□□□ 0.53
COL27A1-207ENST00000494090 ZCWPW2A0A1B0GU75 182 aa18.39■□□□□ 0.53
COL27A1-207ENST00000494090 OR4D2P58180 307 aa18.39■□□□□ 0.53
COL27A1-207ENST00000494090 GABARAPL2P60520 117 aa18.39■□□□□ 0.53
COL27A1-207ENST00000494090 PLEKHG7Q6ZR37 379 aa18.39■□□□□ 0.53
COL27A1-207ENST00000494090 STOX2Q9P2F5 926 aaPredicted RBP18.39■□□□□ 0.53
COL27A1-207ENST00000494090 LNX2Q8N448 690 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 SOX17Q9H6I2 414 aaPredicted RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 PDE7BQ9NP56 450 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ERVK-18Q9QC07 812 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 WDR37Q9Y2I8 494 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 G3V2L1 256 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 STOMP27105 288 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 CEBPGP53567 150 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 METTL8Q9H825 291 aaKnown RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 C12orf4Q9NQ89 552 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF69Q9UC07 566 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 GNG8Q9UK08 70 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF451Q9Y4E5 1061 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ASGR2P07307 311 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ETV3P41162 512 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 GATMP50440 423 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 ARSDP51689 593 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MEF2AQ02078 507 aaPredicted RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 FLYWCH1Q4VC44 716 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MFSD2AQ8NA29 543 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 SPERTQ8NA61 448 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 DAZLQ92904 295 aaKnown RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MMABQ96EY8 250 aaPredicted RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 PGAP3Q96FM1 320 aaPredicted RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 FAM118AQ9NWS6 357 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 PLCL2Q9UPR0 1127 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 HSPE1-MOB4S4R3N1 261 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MAP2K4P45985 399 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 TRAM1Q15629 374 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 TMEM236Q5W0B7 351 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 PM20D1Q6GTS8 502 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MR1Q95460 341 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 WACQ9BTA9 647 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 NPLQ9BXD5 320 aaPredicted RBP18.38■□□□□ 0.53
COL27A1-207ENST00000494090 B4GALT7Q9UBV7 327 aa18.38■□□□□ 0.53
COL27A1-207ENST00000494090 MYOCOSA0A1B0GUC4 107 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 H7BY64 318 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 DUX1O43812 170 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SLC19A2O60779 497 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 HOXA11P31270 313 aaPredicted RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 PGGT1BP53609 377 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 CLDN8P56748 225 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 KCTD18Q6PI47 426 aaPredicted RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 PSD4Q8NDX1 1056 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SCAMP4Q969E2 229 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 S100A16Q96FQ6 103 aaKnown RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 PRAP1Q96NZ9 151 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SMG9Q9H0W8 520 aaKnown RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 C8orf33Q9H7E9 229 aaPredicted RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 IL23AQ9NPF7 189 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SOX1O00570 391 aaPredicted RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SOCS2O14508 198 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 EXOC3L2Q2M3D2 409 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SYT11Q9BT88 431 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 C1orf226A1L170 272 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 DISC1C4P0D8 188 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SH3BP2P78314 561 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SLC25A25Q6KCM7 469 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 GPAT4Q86UL3 456 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 TRIM74Q86UV6 250 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 TRIM73Q86UV7 250 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 SMARCD2Q92925 531 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 POLDIP3Q9BY77 421 aaKnown RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF821O75541 412 aaPredicted RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 GGT1P19440 569 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 HNRNPA0Q13151 305 aaKnown RBP18.37■□□□□ 0.53
COL27A1-207ENST00000494090 TMEM35AQ53FP2 167 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 GAL3ST3Q96A11 431 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 PADI2Q9Y2J8 665 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 MYH6P13533 1939 aa18.37■□□□□ 0.53
COL27A1-207ENST00000494090 TCRBV21S2A2A0A5A6 115 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF840PA6NDX5 716 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 EMC8O43402 210 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 PROM1O43490 865 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 RNF13O43567 381 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 LDB2O43679 373 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 ISCA2Q86U28 154 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 ZSCAN1Q8NBB4 408 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 THAP6Q8TBB0 222 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 SHKBP1Q8TBC3 707 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 FANK1Q8TC84 345 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 TIGARQ9NQ88 270 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 IGSF5Q9NSI5 407 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 SMOXQ9NWM0 555 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 IL33O95760 270 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 PENKP01210 267 aaPredicted RBP18.36■□□□□ 0.53
COL27A1-207ENST00000494090 IL3P08700 152 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF84P51523 738 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 RPS15AP62244 130 aaKnown RBP18.36■□□□□ 0.53
COL27A1-207ENST00000494090 ZNF181Q2M3W8 571 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 KIAA0319Q5VV43 1072 aa18.36■□□□□ 0.53
COL27A1-207ENST00000494090 DPY19L3Q6ZPD9 716 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms