RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PHACTR1Q9C0D0 580 aa20.02■□□□□ 0.8
USP40-215ENST00000484528 ROGDIQ9GZN7 287 aa20.02■□□□□ 0.8
USP40-215ENST00000484528 OR51B5Q9H339 312 aa20.02■□□□□ 0.8
USP40-215ENST00000484528 MYOTQ9UBF9 498 aa20.02■□□□□ 0.8
USP40-215ENST00000484528 VTI1BQ9UEU0 232 aa20.02■□□□□ 0.8
USP40-215ENST00000484528 INTS1Q8N201 2190 aaKnown RBP20.02■□□□□ 0.8
USP40-215ENST00000484528 OTOGQ6ZRI0 2925 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 ESYT3A0FGR9 886 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 FAM166BA8MTA8 275 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 E9PLN8 166 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 HIST1H1TP22492 207 aaPredicted RBP20.01■□□□□ 0.79
USP40-215ENST00000484528 CRABP2P29373 138 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 CASP2P42575 452 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 CAV1Q03135 178 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 E2F2Q14209 437 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 AP5B1Q2VPB7 878 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 OR4N5Q8IXE1 308 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 LAS2Q8IYD9 372 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 TEX9Q8N6V9 391 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 MORN4Q8NDC4 146 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 SRFBP1Q8NEF9 429 aaKnown RBP20.01■□□□□ 0.79
USP40-215ENST00000484528 C16orf52Q8NHV5 167 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 SLC2A12Q8TD20 617 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 UBE2E3Q969T4 207 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 SDCCAG3Q96C92 435 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 VKORC1Q9BQB6 163 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 DEFB127Q9H1M4 99 aa20.01■□□□□ 0.79
USP40-215ENST00000484528 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.01■□□□□ 0.79
USP40-215ENST00000484528 PHF3Q92576 2039 aaKnown RBP20■□□□□ 0.79
USP40-215ENST00000484528 ETHE1O95571 254 aa20■□□□□ 0.79
USP40-215ENST00000484528 CPN2P22792 545 aa20■□□□□ 0.79
USP40-215ENST00000484528 PTGER4P35408 488 aa20■□□□□ 0.79
USP40-215ENST00000484528 SLC7A5Q01650 507 aa20■□□□□ 0.79
USP40-215ENST00000484528 PLGLB1Q02325 96 aa20■□□□□ 0.79
USP40-215ENST00000484528 ZNF750Q32MQ0 723 aa20■□□□□ 0.79
USP40-215ENST00000484528 TMEM35AQ53FP2 167 aa20■□□□□ 0.79
USP40-215ENST00000484528 MROH9Q5TGP6 573 aa20■□□□□ 0.79
USP40-215ENST00000484528 KHDRBS2Q5VWX1 349 aaKnown RBP20■□□□□ 0.79
USP40-215ENST00000484528 CENPLQ8N0S6 344 aaPredicted RBP20■□□□□ 0.79
USP40-215ENST00000484528 FAM57AQ8TBR7 257 aa20■□□□□ 0.79
USP40-215ENST00000484528 PHF10Q8WUB8 498 aaKnown RBP20■□□□□ 0.79
USP40-215ENST00000484528 ANKRD9Q96BM1 317 aaPredicted RBP20■□□□□ 0.79
USP40-215ENST00000484528 TRIM8Q9BZR9 551 aa20■□□□□ 0.79
USP40-215ENST00000484528 ACOT9Q9Y305 439 aa20■□□□□ 0.79
USP40-215ENST00000484528 ANGPTL3Q9Y5C1 460 aa20■□□□□ 0.79
USP40-215ENST00000484528 SPACA6W5XKT8 324 aa20■□□□□ 0.79
USP40-215ENST00000484528 SYNDIG1LA6NDD5 238 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 LRRC14BA6NHZ5 514 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 FGF17O60258 216 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 ZNF354AO60765 605 aaPredicted RBP19.99■□□□□ 0.79
USP40-215ENST00000484528 PRKRAO75569 313 aaKnown RBP19.99■□□□□ 0.79
USP40-215ENST00000484528 SCELO95171 688 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 MTHFD2P13995 350 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 EPB42P16452 691 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 KIR3DL1P43629 444 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 ETF1P62495 437 aaKnown RBP19.99■□□□□ 0.79
USP40-215ENST00000484528 RNF4P78317 190 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 NAB1Q13506 487 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 SERTAD2Q14140 314 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 UAP1Q16222 522 aaPredicted RBP19.99■□□□□ 0.79
USP40-215ENST00000484528 GRHL2Q6ISB3 625 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 CHSY3Q70JA7 882 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 OR2M7Q8NG81 312 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 DOK4Q8TEW6 326 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 CMTM7Q96FZ5 175 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 HRH3Q9Y5N1 445 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 ADGRG4Q8IZF6 3080 aa19.99■□□□□ 0.79
USP40-215ENST00000484528 RAP1GDS1P52306 607 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 PPIAP62937 165 aaKnown RBP19.98■□□□□ 0.79
USP40-215ENST00000484528 GUCY2DQ02846 1103 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 UBAP2Q5T6F2 1119 aaKnown RBP19.98■□□□□ 0.79
USP40-215ENST00000484528 CEP128Q6ZU80 1094 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 GPALPP1Q8IXQ4 340 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 EID3Q8N140 333 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 MARVELD2Q8N4S9 558 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 HUS1BQ8NHY5 278 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 SCYL1Q96KG9 808 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 MTERF1Q99551 399 aaKnown RBP19.98■□□□□ 0.79
USP40-215ENST00000484528 DMRT3Q9NQL9 472 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 SNX15Q9NRS6 342 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 NCKAP5O14513 1909 aa19.98■□□□□ 0.79
USP40-215ENST00000484528 CSMD2Q7Z408 3487 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 ANKRD17O75179 2603 aaKnown RBP19.97■□□□□ 0.79
USP40-215ENST00000484528 HCFC1P51610 2035 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 HMX2A2RU54 273 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 C2P06681 752 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 GFAPP14136 432 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 SERPINB1P30740 379 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 SLAMF1Q13291 335 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 SETDB1Q15047 1291 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 PFKFB4Q16877 469 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 DEPDC1Q5TB30 811 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 C18orf63Q68DL7 685 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 OR4C11Q6IEV9 310 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 DGAT2L6Q6ZPD8 337 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 ZNF295-AS1Q8N0V1 137 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 RPRMLQ8N4K4 120 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 ZNF721Q8TF20 911 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 CA5BP1Q8WTZ4 195 aa19.97■□□□□ 0.79
USP40-215ENST00000484528 PPWD1Q96BP3 646 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms