RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TBC1D20Q96BZ9 403 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 OR1F2PQ96R84 312 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 PAIP2Q9BPZ3 127 aaKnown RBP16.65■□□□□ 0.26
COL7A1-205ENST00000465238 SHCBP1LQ9BZQ2 653 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 EML4Q9HC35 981 aaKnown RBP16.65■□□□□ 0.26
COL7A1-205ENST00000465238 ZNF160Q9HCG1 818 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 FARSBQ9NSD9 589 aaKnown RBP16.65■□□□□ 0.26
COL7A1-205ENST00000465238 NKIRAS1Q9NYS0 192 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 AHSPQ9NZD4 102 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 TIMM22Q9Y584 194 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 CACNA1DQ01668 2161 aa16.65■□□□□ 0.26
COL7A1-205ENST00000465238 NSG1A0A0A6YYJ2 146 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 RTCAO00442 366 aaKnown RBP16.64■□□□□ 0.25
COL7A1-205ENST00000465238 PCDH17O14917 1159 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 JRKO75564 520 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 FHP07954 510 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 HIST1H1TP22492 207 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-205ENST00000465238 JAK1P23458 1154 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ATP5A1P25705 553 aaKnown RBP16.64■□□□□ 0.25
COL7A1-205ENST00000465238 CERS1P27544 350 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 SERPINB5P36952 375 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF33BQ06732 778 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 RCN2Q14257 317 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 TCHHL1Q5QJ38 904 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-205ENST00000465238 LINC00696Q6ZRV3 163 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ZCCHC23Q6ZST2 131 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 NDUFAF7Q7L592 441 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 LURAP1LQ8IV03 231 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ACOT4Q8N9L9 421 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 GRHL3Q8TE85 626 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 FAR1Q8WVX9 515 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 METTL21AQ8WXB1 218 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 C8orf44Q96CB5 159 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ATP6V1G3Q96LB4 118 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 KCNA7Q96RP8 456 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 MESP1Q9BRJ9 268 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 RBCK1Q9BYM8 510 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 ACBD3Q9H3P7 528 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 BRF2Q9HAW0 419 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 SLC12A4Q9UP95 1085 aa16.64■□□□□ 0.25
COL7A1-205ENST00000465238 A0A1W2PQ72 361 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 PLPP1O14494 284 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 B4GALT2O60909 372 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 SEMA3DO95025 777 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 ETHE1O95571 254 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 CLDN1O95832 211 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 DHRS4L1P0CG22 281 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 UROSP10746 265 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 HSD3B1P14060 373 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 EDN3P14138 238 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 HSD3B2P26439 372 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 SLC18A1P54219 525 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 CSTF3Q12996 717 aaKnown RBP16.63■□□□□ 0.25
COL7A1-205ENST00000465238 FAAH2Q6GMR7 532 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 RPUSD3Q6P087 351 aaKnown RBP16.63■□□□□ 0.25
COL7A1-205ENST00000465238 HOMEZQ8IX15 550 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 SHISA5Q8N114 240 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 GBP7Q8N8V2 638 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-205ENST00000465238 ADAMTS18Q8TE60 1221 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 SORBS1Q9BX66 1292 aaKnown RBP16.63■□□□□ 0.25
COL7A1-205ENST00000465238 MRPS33Q9Y291 106 aaKnown RBP16.63■□□□□ 0.25
COL7A1-205ENST00000465238 SPACA6W5XKT8 324 aa16.63■□□□□ 0.25
COL7A1-205ENST00000465238 AZIN1O14977 448 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 CDC123O75794 336 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-205ENST00000465238 SCELO95171 688 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 SERPINA7P05543 415 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 CYC1P08574 325 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 PRR35P0CG20 571 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 COX6A1P12074 109 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 SERPINB3P29508 390 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 FOXA1P55317 472 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 LIM2P55344 173 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 RAB38P57729 211 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 GALNT1Q10472 559 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-205ENST00000465238 CHI3L2Q15782 390 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 ARL13AQ5H913 290 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-205ENST00000465238 FAM180AQ6UWF9 173 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 ZNF793Q6ZN11 406 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 NUDT13Q86X67 352 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 MGARPQ8TDB4 240 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 HBEGFQ99075 208 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 SH3GL2Q99962 352 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 VN1R1Q9GZP7 353 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 LYRM4Q9HD34 91 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 RIC8BQ9NVN3 520 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 VPS29Q9UBQ0 182 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 DAPP1Q9UN19 280 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 CREBBPQ92793 2442 aa16.62■□□□□ 0.25
COL7A1-205ENST00000465238 IGHV1-45A0A0A0MS14 117 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 DYTNA2CJ06 578 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 FAM227AF5H4B4 570 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 CLDN4O14493 209 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 CHEK2O96017 543 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 SERPINE1P05121 402 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 CHRNGP07510 517 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 C8orf89P0DMQ9 161 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 BSGP35613 385 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 SOX11P35716 441 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 HTR6P50406 440 aa16.61■□□□□ 0.25
COL7A1-205ENST00000465238 ARG2P78540 354 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms