RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MOSPD3O75425 235 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 NCR1O76036 304 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SLC16A8O95907 504 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CKMP06732 381 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 C1SP09871 688 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SERPINA4P29622 427 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 EPHA5P54756 1037 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 PFN3P60673 137 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 OLR1P78380 273 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 KRR1Q13601 381 aaKnown RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SPHARQ15513 63 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF79Q15937 498 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SPOUT1Q5T280 376 aaKnown RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 TUBA3EQ6PEY2 450 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 KIAA0907Q7Z7F0 614 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 PIK3R3Q92569 461 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 ART5Q96L15 291 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 EPYCQ99645 322 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 FAM83CQ9BQN1 747 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 HHATLQ9HCP6 504 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CRNNQ9UBG3 495 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SPIN1Q9Y657 262 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 ALPK2Q86TB3 2170 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 WASH3PC4AMC7 463 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SGTAO43765 313 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ANXA8P13928 327 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CYP2A7P20853 494 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 MYL9P24844 172 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 APEX1P27695 318 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ARPC4P59998 168 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CDK6Q00534 326 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ALDH6A1Q02252 535 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 INSL4Q14641 139 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SYTL3Q4VX76 610 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 RNASE12Q5GAN4 147 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CEP78Q5JTW2 689 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 FAM209AQ5JX71 171 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 Q6ZVL8 140 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ATP6V1C2Q8NEY4 427 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TMCO6Q96DC7 493 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 OPALINQ96PE5 141 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ZDHHC3Q9NYG2 299 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 NLKQ9UBE8 527 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SNX11Q9Y5W9 270 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SPEGQ15772 3267 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SCN2AQ99250 2005 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TMEM229AB2RXF0 380 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 RTCAO00442 366 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 MYL12BO14950 172 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SCAMP2O15127 329 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 KLK1P06870 262 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SDC2P34741 201 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TIE1P35590 1138 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 RORCP51449 518 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 PLAG1Q6DJT9 500 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 LINC00299Q6ZSB3 139 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CMTM8Q8IZV2 173 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF740Q8NDX6 193 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 NLGN4YQ8NFZ3 816 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 MRPS31Q92665 395 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SNAPC3Q92966 411 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 DACT3Q96B18 629 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 PRR14Q9BWN1 585 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 RNF208Q9H0X6 261 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 IL20RAQ9UHF4 553 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CNTRLQ7Z7A1 2325 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 A0A1W2PRU2 124 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TLR4O00206 839 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 NME6O75414 186 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 FGF18O76093 207 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ARHGEF15O94989 841 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 EIF2S1P05198 315 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 BCHEP06276 602 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 PRPH2P23942 346 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SLC6A12P48065 614 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 INPP1P49441 399 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TAS2R50P59544 299 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 GALK2Q01415 458 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 SCN1BQ07699 218 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TARDBPQ13148 414 aaKnown RBP eCLIP11.85□□□□□ -0.511e-6■■■■□ 25.7
HDAC4-208ENST00000463007 GPR50Q13585 617 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TIMM50Q3ZCQ8 353 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 GGTA1PQ4G0N0 100 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ATAT1Q5SQI0 421 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 GCNT6Q5T4J0 391 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 FRMPD2BQ6IN97 320 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 BRAT1Q6PJG6 821 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CASP12Q6UXS9 341 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ATCAYQ86WG3 371 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 TIGD4Q8IY51 512 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 WDR48Q8TAF3 677 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 GATAD2BQ8WXI9 593 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 GABARAPL3Q9BY60 117 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 ACER3Q9NUN7 267 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 FAM120CQ9NX05 1096 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 CLEC4AQ9UMR7 237 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 RUVBL1Q9Y265 456 aaKnown RBP11.85□□□□□ -0.51
HDAC4-208ENST00000463007 HCN4Q9Y3Q4 1203 aa11.85□□□□□ -0.51
HDAC4-208ENST00000463007 PLK4O00444 970 aa11.84□□□□□ -0.51
HDAC4-208ENST00000463007 CSO75390 466 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms