RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZCCHC12Q6PEW1 402 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 C6orf120Q7Z4R8 191 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CALHM3Q86XJ0 350 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 DEPDC4Q8N2C3 294 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 ARL10Q8N8L6 244 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 C19orf47Q8N9M1 422 aaKnown RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 LINC01555Q8NAE3 123 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 ZCCHC10Q8TBK6 192 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 MRPS26Q9BYN8 205 aaKnown RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 PTGFRNQ9P2B2 879 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 RAPGEFL1Q9UHV5 662 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 IFT52Q9Y366 437 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 KIF26AQ9ULI4 1882 aaPredicted RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 TRPM6Q9BX84 2022 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 MYO9BQ13459 2157 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 A0A087WXM4 84 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 BTN3A3O00478 584 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 PORP16435 677 aaPredicted RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 CAPGP40121 348 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 NXPH1P58417 271 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 RAB8AP61006 207 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 UBE2IP63279 158 aaKnown RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 RAE1P78406 368 aaKnown RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 TNFRSF17Q02223 184 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 C1orf61Q13536 156 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CLPPQ16740 277 aaPredicted RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 ADPRMQ3LIE5 342 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CYBRD1Q53TN4 286 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CBLL1Q75N03 491 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CLECL1Q8IZS7 167 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 CBR4Q8N4T8 237 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 MAGEE2Q8TD90 523 aaPredicted RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 RLN3Q8WXF3 142 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 ZNF578Q96N58 590 aaPredicted RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 CIB1Q99828 191 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 RPF2Q9H7B2 306 aaKnown RBP7.97□□□□□ -1.13
USP54-203ENST00000418501 HHATLQ9HCP6 504 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 POMT2Q9UKY4 750 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 SCN8AQ9UQD0 1980 aa7.97□□□□□ -1.13
USP54-203ENST00000418501 A0A0A6YYD5 115 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 A0A0G2JPF8 293 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ASPDHA6ND91 283 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 SNTNA6NMZ2 147 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HNRNPCL2B2RXH8 293 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HNRNPCL3B7ZW38 293 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HBQ1P09105 142 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 IFI6P09912 130 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ALOX5P09917 674 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HNRNPCL4P0DMR1 293 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 MATN1P21941 496 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 AQP4P55087 323 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ZP2Q05996 745 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 GPAT3Q53EU6 434 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 KIAA1614Q5VZ46 1190 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 RNF130Q86XS8 419 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ZZZ3Q8IYH5 903 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 MARVELD2Q8N4S9 558 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ZNF740Q8NDX6 193 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 OR8K5Q8NH50 307 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 RBM18Q96H35 190 aaKnown RBP7.96□□□□□ -1.13
USP54-203ENST00000418501 FOXQ1Q9C009 403 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 SLC6A20Q9NP91 592 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 A4GALTQ9NPC4 353 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 KLK4Q9Y5K2 254 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HS6ST1O60243 411 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ZBTB11O95625 1053 aaPredicted RBP7.96□□□□□ -1.13
USP54-203ENST00000418501 CER1O95813 267 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ARAFP10398 606 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 EMP3P54852 163 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 RAB38P57729 211 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 PSPHP78330 225 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 SERTAD2Q14140 314 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.96□□□□□ -1.13
USP54-203ENST00000418501 SLC48A1Q6P1K1 146 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 SPNS2Q8IVW8 549 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 ARL14Q8N4G2 192 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 SUN3Q8TAQ9 357 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 CREB3L4Q8TEY5 395 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 MAGED4Q96JG8 741 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 HSH2DQ96JZ2 352 aa7.96□□□□□ -1.13
USP54-203ENST00000418501 TRBV5-3A0A0A0MS03 114 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 TMEM150CB9EJG8 249 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 ASNA1O43681 348 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 PRAMEF4O60810 478 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 C9P02748 559 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 GBAP04062 536 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 TNNI3P19429 210 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 PRKAG1P54619 331 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 NR0B2Q15466 257 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 OTUD3Q5T2D3 398 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 PRAMEF9Q5VWM5 478 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 ANKRD26P1Q6NSI1 321 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 WDR5BQ86VZ2 330 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 PLD3Q8IV08 490 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 MCATQ8IVS2 390 aaKnown RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 SLC44A2Q8IWA5 706 aaPredicted RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 PEX5LQ8IYB4 626 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 PHF10Q8WUB8 498 aaKnown RBP7.96□□□□□ -1.14
USP54-203ENST00000418501 XAGE5Q8WWM1 108 aa7.96□□□□□ -1.14
USP54-203ENST00000418501 SH3GL3Q99963 347 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms