RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CD244Q9BZW8 370 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 ENKD1Q9H0I2 346 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 EHD1Q9H4M9 534 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 PLSCR2Q9NRY7 297 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 VTI1BQ9UEU0 232 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 ATP6AP2A0A1C7CYW4 349 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ATP6AP2O75787 350 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 SLC35E2BP0CK96 405 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 CPN2P22792 545 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 GSTM2P28161 218 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 GP5P40197 560 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 SSR2P43308 183 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ATP6V0D1P61421 351 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 IRF9Q00978 393 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 GTF3C1Q12789 2109 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ASPHQ12797 758 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 CALCOCO2Q13137 446 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ZKSCAN8Q15776 578 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 HIST2H2ACQ16777 129 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 KBTBD12Q3ZCT8 623 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 GXYLT1Q4G148 440 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 C18orf63Q68DL7 685 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 HIST2H2AA3Q6FI13 130 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ZNF585AQ6P3V2 769 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ARHGAP11AQ6P4F7 1023 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 FAM47EQ6ZV65 393 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 MYLK4Q86YV6 388 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 TMEM251Q8N6I4 163 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 OR5M3Q8NGP4 307 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 OR14A16Q8NHC5 309 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ZNF721Q8TF20 911 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 RND1Q92730 232 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 DAZLQ92904 295 aaKnown RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 UCN3Q969E3 161 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 NXNL1Q96CM4 212 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 KCNC2Q96PR1 638 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 ERP44Q9BS26 406 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 CNPPD1Q9BV87 410 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 PITHD1Q9GZP4 211 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 TP63Q9H3D4 680 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 LYRM4Q9HD34 91 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 IGSF5Q9NSI5 407 aa10.71□□□□□ -0.69
USP4-204ENST00000416417 TUBA8Q9NY65 449 aaPredicted RBP10.71□□□□□ -0.69
USP4-204ENST00000416417 TOXO94900 526 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 GLSO94925 669 aaPredicted RBP10.7□□□□□ -0.7
USP4-204ENST00000416417 CNR1P21554 472 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 HIST1H1TP22492 207 aaPredicted RBP10.7□□□□□ -0.7
USP4-204ENST00000416417 PLTPP55058 493 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 TFF3Q07654 80 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 TGM3Q08188 693 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 SLAMF1Q13291 335 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 LAPTM5Q13571 262 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 SNTB1Q13884 538 aaKnown RBP10.7□□□□□ -0.7
USP4-204ENST00000416417 AP5B1Q2VPB7 878 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 PAGE2BQ5JRK9 111 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 PRAMEF20Q5VT98 475 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 MED27Q6P2C8 311 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 RTL4Q6ZR62 310 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 ISCA2Q86U28 154 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 CDH24Q86UP0 819 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 C9orf40Q8IXQ3 194 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 EID3Q8N140 333 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 C17orf53Q8N3J3 647 aaPredicted RBP10.7□□□□□ -0.7
USP4-204ENST00000416417 TEX9Q8N6V9 391 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 ACBD4Q8NC06 268 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 BBOF1Q8ND07 529 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 OR7G3Q8NG95 312 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 OR10Q1Q8NGQ4 319 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 FBF1Q8TES7 1133 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 KCTD4Q8WVF5 259 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 SMC6Q96SB8 1091 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 ATOH8Q96SQ7 321 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 MTERF1Q99551 399 aaKnown RBP10.7□□□□□ -0.7
USP4-204ENST00000416417 FAM173AQ9BQD7 235 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 TBCDQ9BTW9 1192 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 PHACTR1Q9C0D0 580 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 ZDHHC11Q9H8X9 412 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 WHRNQ9P202 907 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 CACNA1CQ13936 2221 aa10.7□□□□□ -0.7
USP4-204ENST00000416417 FAM187AA6NFU0 413 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 GLOD5A6NK44 160 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 ACOT7O00154 380 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 CHRNB4P30926 498 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 SPRP35270 261 aaPredicted RBP10.69□□□□□ -0.7
USP4-204ENST00000416417 PIK3CGP48736 1102 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 HNRNPH2P55795 449 aaKnown RBP10.69□□□□□ -0.7
USP4-204ENST00000416417 FOLH1Q04609 750 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 CBLBQ13191 982 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 SERTAD2Q14140 314 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 RCN2Q14257 317 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 TBCCQ15814 346 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 CDKL4Q5MAI5 379 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 UBAP2Q5T6F2 1119 aaKnown RBP10.69□□□□□ -0.7
USP4-204ENST00000416417 GRTP1Q5TC63 336 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 KHDRBS2Q5VWX1 349 aaKnown RBP10.69□□□□□ -0.7
USP4-204ENST00000416417 FAM219BQ5XKK7 198 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 TMEM211Q6ICI0 200 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 OR4C11Q6IEV9 310 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 LRRC70Q7Z2Q7 622 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 SLC22A16Q86VW1 577 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms