RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PDPK1O15530 556 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 GPR37L1O60883 481 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 CCNB2O95067 398 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 CCDC159P0C7I6 412 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 LINC00271P0C7V0 271 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PRMT2P55345 433 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ELP6Q0PNE2 266 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 SGCGQ13326 291 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 VN1R5Q7Z5H4 357 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 TCEANCQ8N8B7 351 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 HPS1Q92902 700 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 C16orf58Q96GQ5 468 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ART5Q96L15 291 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ANGPT4Q9Y264 503 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 DNMT3AQ9Y6K1 912 aaPredicted RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 CCT3P49368 545 aaKnown RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 TMEM240Q5SV17 173 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 LRRTM4Q86VH4 590 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 TSPYL5Q86VY4 417 aaPredicted RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 TERB1Q8NA31 727 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 B3GNT7Q8NFL0 401 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PPP1R16AQ96I34 528 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 COQ10AQ96MF6 247 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 AIF1LQ9BQI0 150 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 CNPPD1Q9BV87 410 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 CLEC2DQ9UHP7 191 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 NDRG4Q9ULP0 352 aaKnown RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 TRIM64CA6NLI5 447 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 JRKO75564 520 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 KAT7O95251 611 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 DDX5P17844 614 aaKnown RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 AVPR1BP47901 424 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 NKX2-5P52952 324 aaPredicted RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 LIM2P55344 173 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 IFITM3Q01628 133 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 SLC9B2Q86UD5 537 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 SLC22A16Q86VW1 577 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 POC5Q8NA72 575 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 OR52N2Q8NGI0 321 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 HMG20AQ9NP66 347 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PRSS16Q9NQE7 514 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 NTNG1Q9Y2I2 539 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PGRMC2O15173 223 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CDH3P22223 829 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 RYKP34925 604 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 MAGEA2P43356 314 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 GJA8P48165 433 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 MVDP53602 400 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CDK3Q00526 305 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 TMEM107Q6UX40 140 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CROCCP3Q8IVE0 287 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 ZNF675Q8TD23 568 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 WDR26Q9H7D7 661 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 AP3M1Q9Y2T2 418 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 PLXND1Q9Y4D7 1925 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 EDDM13A0A1B0GTR0 161 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 FUOMA2VDF0 154 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 C18orf63Q68DL7 685 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 ZNF513Q8N8E2 541 aaPredicted RBP12.73□□□□□ -0.37
VPS54-203ENST00000409558 RDH12Q96NR8 316 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 INSM2Q96T92 566 aaPredicted RBP12.73□□□□□ -0.37
VPS54-203ENST00000409558 C1GALT1Q9NS00 363 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CARD8Q9Y2G2 431 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 TLX2O43763 284 aaPredicted RBP12.73□□□□□ -0.37
VPS54-203ENST00000409558 NFATC1O95644 943 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CD72P21854 359 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 PTX3P26022 381 aaPredicted RBP12.73□□□□□ -0.37
VPS54-203ENST00000409558 TEAD4Q15561 434 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 SMU1Q2TAY7 513 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 SVOPQ8N4V2 548 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 DTX3Q8N9I9 347 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 CCL4L1Q8NHW4 92 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 ZG16BQ96DA0 208 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 TUBA1CQ9BQE3 449 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 DPH7Q9BTV6 452 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 EHD1Q9H4M9 534 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 FBXL12Q9NXK8 326 aa12.73□□□□□ -0.37
VPS54-203ENST00000409558 TTC36A6NLP5 189 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 C1QTNF3-AMACRE9PGA6 284 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 RNASET2O00584 256 aaKnown RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 KDM1AO60341 852 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 HOXB9P17482 250 aaPredicted RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 ITIH1P19827 911 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 KELP23276 732 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 KCNC3Q14003 757 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 SEC23BQ15437 767 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 C9orf50Q5SZB4 431 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 KHDRBS2Q5VWX1 349 aaKnown RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 ARMC8Q8IUR7 673 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CPA6Q8N4T0 437 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 FAM83FQ8NEG4 500 aaPredicted RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 SLC9A6Q92581 669 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 PMF1-BGLAPU3KQ54 211 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 TRANK1O15050 2925 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CABIN1Q9Y6J0 2220 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CLDN24A6NM45 220 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 CNOT3O75175 753 aaKnown RBP12.72□□□□□ -0.37
VPS54-203ENST00000409558 ITGB7P26010 798 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 PCGF2P35227 344 aa12.72□□□□□ -0.37
VPS54-203ENST00000409558 TFF2Q03403 129 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms