RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ERVK-25P63136 954 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 OXA1LQ15070 435 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 RD3Q7Z3Z2 195 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 GPR149Q86SP6 731 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 TSPYL5Q86VY4 417 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NPAS4Q8IUM7 802 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 LILRA3Q8N6C8 439 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 BOLLQ8N9W6 283 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 PAPD5Q8NDF8 572 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 OR2AP1Q8NGE2 309 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 TRIM43Q96BQ3 446 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 FYTTD1Q96QD9 318 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MNTQ99583 582 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 C12orf57Q99622 126 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MMP27Q9H306 513 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NECTIN3Q9NQS3 549 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 HPF1Q9NWY4 346 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 YIPF1Q9Y548 306 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 PCDH8O95206 1070 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 ECDO95905 644 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NR2F6P10588 404 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 PPP2R1BP30154 601 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 SSTR2P30874 369 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 HOXC13P31276 330 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 GPR1P46091 355 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 CLCN4P51793 760 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 CDK10Q15131 360 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MED27Q6P2C8 311 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NCEH1Q6PIU2 408 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 CEACAM20Q6UY09 585 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF767PQ75MW2 155 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 WFDC5Q8TCV5 224 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 CIDECQ96AQ7 238 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 HTATIP2Q9BUP3 242 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 RHBGQ9H310 441 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NARFLQ9H6Q4 476 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NDUFAF4Q9P032 175 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 PRKAG2Q9UGJ0 569 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 POM121CA8CG34 1229 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 SMLR1H3BR10 107 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 M0R233 179 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TSPAN6O43657 245 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 NME6O75414 186 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 UPK1BO75841 260 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CNR2P34972 360 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 HTRA3P83110 453 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TIAL1Q01085 375 aaKnown RBP eCLIP11.43□□□□□ -0.583e-6■■■■□ 21.9
HMGB1-206ENST00000405805 SLC14A2Q15849 920 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ESCO2Q56NI9 601 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 SMARCD3Q6STE5 483 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 VRK3Q8IV63 474 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TEX26Q8N6G2 289 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ZBTB44Q8NCP5 570 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 RHOXF1Q8NHV9 184 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PEX13Q92968 403 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 OR2AG1Q9H205 316 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 RLIMQ9NVW2 624 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PTGFRNQ9P2B2 879 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CDH7Q9ULB5 785 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 MED16Q9Y2X0 877 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 MAB21L2Q9Y586 359 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 DRGXA6NNA5 263 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 WASH4PA8MWX3 477 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PRSS44E7EML9 344 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TSPAN12O95859 305 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PTHP01270 115 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 RETP07949 1114 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 THEGLP0DJG4 465 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ANXA8P13928 327 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ATP1B2P14415 290 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ITGA1P56199 1179 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CBX2Q14781 532 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ARSIQ5FYB1 569 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 RPS26P11Q5JNZ5 115 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 KIAA1161Q6NSJ0 714 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 IKBIPQ70UQ0 350 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TEX47Q8TBZ9 253 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CMTM7Q96FZ5 175 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ALOXE3Q9BYJ1 711 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PPA2Q9H2U2 334 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CLMPQ9H6B4 373 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 SLC39A1Q9NY26 324 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TRBV23OR9-2A0A075B6M9 112 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CCL16O15467 120 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 PRSS23O95084 383 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 SLC16A8O95907 504 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 DDX6P26196 483 aaKnown RBP eCLIP11.43□□□□□ -0.588e-6■□□□□ 9.7
HMGB1-206ENST00000405805 CD70P32970 193 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CA5AP35218 305 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 MVKQ03426 396 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 CAPN13Q6MZZ7 669 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 OLIG3Q7RTU3 272 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 RIMKLAQ8IXN7 391 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 METTL4Q8N3J2 472 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 TCEAL3Q969E4 200 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 DUS3LQ96G46 650 aaKnown RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 ERMAPQ96PL5 475 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-206ENST00000405805 OR5M11Q96RB7 305 aa11.43□□□□□ -0.58
HMGB1-206ENST00000405805 POLE3Q9NRF9 147 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms