RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 AIF1LQ9BQI0 150 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 PEX16Q9Y5Y5 336 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 DOCK11Q5JSL3 2073 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 MIA3Q5JRA6 1907 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 NUP98P52948 1817 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 PRNPP04156 253 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 HTR1AP08908 422 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 CLEC2LP0C7M8 214 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 BUD31P41223 144 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 SLC6A12P48065 614 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 METAP1P53582 386 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 ST3GAL4Q11206 333 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 KEAP1Q14145 624 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 MICAQ29983 383 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 SOWAHCQ53LP3 525 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 RBM45Q8IUH3 476 aaKnown RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 OR9A1PQ8NGU1 263 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 THRSPQ92748 146 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 C1GALT1C1Q96EU7 318 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 TRIM45Q9H8W5 580 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 MRPL39Q9NYK5 338 aaKnown RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 TMPRSS11EQ9UL52 423 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 WDR37Q9Y2I8 494 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 LYVE1Q9Y5Y7 322 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 CHD3Q12873 2000 aaKnown RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 BTAF1O14981 1849 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 WDFY4Q6ZS81 3184 aa4.72□□□□□ -1.65
SMAD4-202ENST00000398417 COL5A3P25940 1745 aaPredicted RBP4.72□□□□□ -1.65
SMAD4-202ENST00000398417 SLC35F4A4IF30 521 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 FAM170BA6NMN3 283 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 ADAMDEC1O15204 470 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CCNKO75909 580 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CDRT1O95170 752 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CNR2P34972 360 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 FEN1P39748 380 aaKnown RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 VIPR2P41587 438 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 SNAPC1Q16533 368 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 ZNF750Q32MQ0 723 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 PUS10Q3MIT2 529 aaKnown RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 IQCF1Q8N6M8 205 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 SCAIQ8N9R8 606 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 TMEM19Q96HH6 336 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 OR5M11Q96RB7 305 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 ZNF300Q96RE9 604 aaPredicted RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 TRMT61BQ9BVS5 477 aaKnown RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CEP44Q9C0F1 390 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 EHD1Q9H4M9 534 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 DNMT3BQ9UBC3 853 aaKnown RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 FBXO10Q9UK96 956 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CKAP5Q14008 2032 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CPSF4LA6NMK7 179 aaKnown RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 C1QTNF3-AMACRE9PGA6 284 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 GABARAPO95166 117 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 PNLIPRP1P54315 467 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 OR2B6P58173 313 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 SELENOWP63302 87 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 GINS1Q14691 196 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 IQCCQ4KMZ1 466 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 SHFQ7M4L6 423 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 TCEANCQ8N8B7 351 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 ENKURQ8TC29 256 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 ADAMTS16Q8TE57 1224 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 UBASH3BQ8TF42 649 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 C17orf50Q8WW18 174 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 YIPF6Q96EC8 236 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 QRFPRQ96P65 431 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 TSSK6Q9BXA6 273 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 CUEDC1Q9NWM3 386 aaPredicted RBP4.71□□□□□ -1.65
SMAD4-202ENST00000398417 PTGFRNQ9P2B2 879 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 OR51B4Q9Y5P0 310 aa4.71□□□□□ -1.65
SMAD4-202ENST00000398417 TP53BP1Q12888 1972 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 LOC110117498-PIK3R3F6TDL0 507 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 H7BY64 318 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 ZNF701M0R085 212 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 KIAA0513O60268 411 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 SLC35G4P0C7Q5 338 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 EPHA2P29317 976 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 RGS6P49758 472 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 GZMMP51124 257 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 NFE2L1Q14494 772 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 GRHL2Q6ISB3 625 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 LAIR2Q6ISS4 152 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 DHRS4L2Q6PKH6 230 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 CALHM3Q86XJ0 350 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 TBC1D19Q8N5T2 526 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 ZFP41Q8N8Y5 198 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 Q8N9G6 341 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 TFGQ92734 400 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 PHF21AQ96BD5 680 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 PRAP1Q96NZ9 151 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 PIP5K1AQ99755 562 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 KCNK12Q9HB15 430 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 CHMP1AQ9HD42 196 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 COQ3Q9NZJ6 369 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 DEC1Q9P2X7 70 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 ZNF639Q9UID6 485 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 HCN4Q9Y3Q4 1203 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 DNAH14Q0VDD8 3507 aa4.71□□□□□ -1.66
SMAD4-202ENST00000398417 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.71□□□□□ -1.66
SMAD4-202ENST00000398417 PIPSLA2A3N6 862 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms