RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZNF615Q8N8J6 731 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 FAM110BQ8TC76 370 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ZNF721Q8TF20 911 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PTPMT1Q8WUK0 201 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CCDC115Q96NT0 180 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CSF3RQ99062 836 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 MTERF1Q99551 399 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 REEP4Q9H6H4 257 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ADAP2Q9NPF8 381 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM200CA6NKL6 621 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SGK494L7N484 410 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 PCDH7O60245 1069 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ALOX12BO75342 701 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 RDH16O75452 317 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 BCAS2O75934 225 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 LSP1P33241 339 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CLNS1AP54105 237 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 DLX5P56178 289 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 BTN3A2P78410 334 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CDC20Q12834 499 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ELAVL1Q15717 326 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ZCCHC12Q6PEW1 402 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 NDUFAF7Q7L592 441 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ST13P4Q8IZP2 240 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 OR2L13Q8N349 312 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ENDOVQ8N8Q3 282 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ANKRD42Q8N9B4 389 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CCDC63Q8NA47 563 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CEP70Q8NHQ1 597 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 NUBPLQ8TB37 319 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 KCNE4Q8WWG9 221 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CHMP6Q96FZ7 201 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SMAD5Q99717 465 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 LMF2Q9BU23 707 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 TUBB6Q9BUF5 446 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 NECTIN3Q9NQS3 549 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 DHCR7Q9UBM7 475 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ZNF223Q9UK11 482 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ADAM10O14672 748 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 NPPAP01160 153 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 PCNAP12004 261 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 RCAN2Q14206 197 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 EXT1Q16394 746 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SNAP47Q5SQN1 464 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 PRAMEF17Q5VTA0 474 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 LYPD8Q6UX82 237 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 R3HCC1LQ7Z5L2 792 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MTERF4Q7Z6M4 381 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 OR14A16Q8NHC5 309 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 TP53INP1Q96A56 240 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CCNL2Q96S94 520 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 KLHL25Q9H0H3 589 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SLCO1B3Q9NPD5 702 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 STARD5Q9NSY2 213 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SIRT3Q9NTG7 399 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 TXLNGQ9NUQ3 528 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 C5AR2Q9P296 337 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CTSFQ9UBX1 484 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 KLHL3Q9UH77 587 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 CAPN14A8MX76 684 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 C9J4A7 227 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 NR2F6P10588 404 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 TSPAN8P19075 237 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MAN2A2P49641 1150 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 DUSP8Q13202 625 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 HEPACAMQ14CZ8 416 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 LSM12Q3MHD2 195 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 ATP6AP1LQ52LC2 224 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 KIRREL2Q6UWL6 708 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 HACD2Q6Y1H2 254 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MRGPREQ86SM8 312 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 RAB43Q86YS6 212 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 APCDD1LQ8NCL9 501 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MOAP1Q96BY2 351 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MIEF2Q96C03 454 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 GIMAP5Q96F15 307 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 FAIM2Q9BWQ8 316 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 MRPL1Q9BYD6 325 aaKnown RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 EPN3Q9H201 632 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 SERHLQ9NQF3 203 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 TEX10Q9NXF1 929 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-202ENST00000394943 PTGFRNQ9P2B2 879 aa6.57□□□□□ -1.36
LIMA1-202ENST00000394943 C1QTNF9BB2RNN3 333 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SNX3O60493 162 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 C1QTNF9P0C862 333 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 BMP2P12643 396 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 IL1RNP18510 177 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 BUD31P41223 144 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TMPRSS3P57727 454 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SRSF11Q05519 484 aaKnown RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FOXM1Q08050 763 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 Q0VFX4 171 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SQLEQ14534 574 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TLR1Q15399 786 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FXNQ16595 210 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 DEFB134Q4QY38 66 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 NDUFAF5Q5TEU4 345 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CPEB2Q7Z5Q1 589 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms