RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ALKBH4Q9NXW9 302 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PLAGL1Q9UM63 463 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 VIRMAQ69YN4 1812 aaKnown RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 TFPTP0C1Z6 253 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PTGS2P35354 604 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PRKCDQ05655 676 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 HYAL2Q12891 473 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 UBXN2BQ14CS0 331 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 TBRG1Q3YBR2 411 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 SLC36A3Q495N2 470 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ALG1LQ6GMV1 187 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF550Q7Z398 422 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ZIC5Q96T25 663 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 MAGIXQ9H6Y5 334 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 HPF1Q9NWY4 346 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 NUP50Q9UKX7 468 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 E7EQ34 232 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 NPIPA5E9PKD4 350 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 SNAPC5O75971 98 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 PAK4O96013 591 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 STSP08842 583 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 HOXB2P14652 356 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RHCEP18577 417 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ETV3P41162 512 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 GRIA2P42262 883 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 NOVP48745 357 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 VAMP2P63027 116 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RPL6Q02878 288 aaKnown RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 UGT8Q16880 541 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 EXOC3L2Q2M3D2 409 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 CYP27C1Q4G0S4 372 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 MAPK15Q8TD08 544 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 FEVQ99581 238 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 NPIPA1Q9UND3 350 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 KIAA0100Q14667 2235 aaKnown RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 FGF18O76093 207 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 OR12D1P0DN82 309 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RPS3P23396 243 aaKnown RBP eCLIP10.97□□□□□ -0.658e-7■■□□□ 11.4
PTPRF-203ENST00000372407 HRH2P25021 359 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 LCN1P31025 176 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 POU6F2P78424 691 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 LMAN2Q12907 356 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RAB30Q15771 203 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 GRK1Q15835 563 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 SGCBQ16585 318 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RAB6CQ53S08 254 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 XKRXQ6PP77 449 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 TSPYL5Q86VY4 417 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 FAM86B1Q8N7N1 296 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RASGEF1AQ8N9B8 481 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 CRYGNQ8WXF5 182 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RFT1Q96AA3 541 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 GPR62Q9BZJ7 368 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 RAB6CQ9H0N0 254 aa10.97□□□□□ -0.65
PTPRF-203ENST00000372407 ZFR2Q9UPR6 939 aaKnown RBP10.97□□□□□ -0.65
PTPRF-203ENST00000372407 CCDC88AQ3V6T2 1871 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF840PA6NDX5 716 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 C9J4A7 227 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SLC1A7O00341 560 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 NME4O00746 187 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 PFKMP08237 780 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 CD9P21926 228 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 GRK5P34947 590 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 MAP2K3P46734 347 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 CLCA4Q14CN2 919 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 OR4D1Q15615 310 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 NRROSQ86YC3 692 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 TP53INP2Q8IXH6 220 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 OR6N1Q8NGY5 312 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 OR2L2Q8NH16 312 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 L3HYPDHQ96EM0 354 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 BEX2Q9BXY8 128 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 BEX1Q9HBH7 125 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 GRHPRQ9UBQ7 328 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 LAMP5Q9UJQ1 280 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 IGKV6D-21A0A0A0MT36 114 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SLC19A2O60779 497 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 ITGA5P08648 1049 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SLC9A3P48764 834 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 STK19P49842 368 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 GABARAPL2P60520 117 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 PSMA6P60900 246 aaKnown RBP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 E2F1Q01094 437 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF267Q14586 743 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF181Q2M3W8 571 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 MORN1Q5T089 497 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 ERN2Q76MJ5 926 aaKnown RBP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 C6orf120Q7Z4R8 191 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 RAB7BQ96AH8 199 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 FUNDC2Q9BWH2 189 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SDR39U1Q9NRG7 319 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SH2B3Q9UQQ2 575 aa10.96□□□□□ -0.65
PTPRF-203ENST00000372407 SLC35F4A4IF30 521 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 SOBPA7XYQ1 873 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 G3V2L1 256 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 STC2O76061 302 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 GNSP15586 552 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 MYF6P23409 242 aa10.96□□□□□ -0.66
PTPRF-203ENST00000372407 MAGEA12P43365 314 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms