RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DNAJC14Q6Y2X3 702 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 RIPOR1Q6ZS17 1223 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 LARP4Q71RC2 724 aaKnown RBP eCLIP3.92□□□□□ -1.78
USH2A-202ENST00000366942 UTS2BQ765I0 119 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 Q8N402 240 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 DYNLRB2Q8TF09 96 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SYN2Q92777 582 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 LRRC58Q96CX6 371 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZG16BQ96DA0 208 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZFP3Q96NJ6 502 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SMG9Q9H0W8 520 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 CHODLQ9H9P2 273 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ATXN10Q9UBB4 475 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TMEM5Q9Y2B1 443 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PCDHGB6Q9Y5F9 930 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 HYAL3O43820 417 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 GOSR1O95249 250 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 DBIP07108 87 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 HK1P19367 917 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PRDX6P30041 224 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ECHS1P30084 290 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FAUP35544 74 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 KCNQ1P51787 676 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PAFAH1B2P68402 229 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FMR1Q06787 632 aaKnown RBP eCLIP3.92□□□□□ -1.78
USH2A-202ENST00000366942 BST1Q10588 318 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 MERTKQ12866 999 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NFYCQ13952 458 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KPNB1Q14974 876 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 DPY19L1Q2PZI1 675 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 GPRC6AQ5T6X5 926 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TSTD2Q5T7W7 516 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SFXN4Q6P4A7 337 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TMEM71Q6P5X7 295 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ERICH5Q6P6B1 374 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 LCLAT1Q6UWP7 414 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 STRA8Q7Z7C7 330 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 UEVLDQ8IX04 471 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC43A2Q8N370 569 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SPICQ8N5J4 248 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC15A4Q8N697 577 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PIGXQ8TBF5 258 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 EPS8L3Q8TE67 593 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 TSEN15Q8WW01 171 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 TP53INP1Q96A56 240 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 APH1AQ96BI3 265 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ELMOD3Q96FG2 381 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ATP5SQ99766 215 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TMEM208Q9BTX3 173 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CENPMQ9NSP4 180 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NUDT4Q9NZJ9 180 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NOP53Q9NZM5 478 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 DUSP13Q9UII6 198 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 GSTK1Q9Y2Q3 226 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 RNF114Q9Y508 228 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 BORCS7-ASMTA0A0B4J1R7 106 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 A0A1W2PQC6 194 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 PPIHO43447 177 aaKnown RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 RNF13O43567 381 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SCO2O43819 266 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 LEFTY1O75610 366 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 FAM155BO75949 473 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 NR4A1P22736 598 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 RGRP47804 291 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 ALDH3A2P51648 485 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 F2RL1P55085 397 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 POU6F2P78424 691 aaPredicted RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 TARDBPQ13148 414 aaKnown RBP eCLIP3.91□□□□□ -1.78
USH2A-202ENST00000366942 ZBTB6Q15916 424 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SLC25A35Q3KQZ1 300 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 OR7E24Q6IFN5 339 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 HEPHL1Q6MZM0 1159 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 C10orf107Q8IVU9 208 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 MARVELD2Q8N4S9 558 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 KYQ8NBH2 561 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 OR9A1PQ8NGU1 263 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 OR2L8Q8NGY9 312 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 OR4C6Q8NH72 309 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 H1FXQ92522 213 aaKnown RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 BORCS7Q96B45 105 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SNRNP25Q9BV90 132 aaKnown RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 S1PR5Q9H228 398 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 TMEM60Q9H2L4 133 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 FKBPLQ9UIM3 349 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 POMPQ9Y244 141 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 A0A1W2PPC4 97 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 M0R2N6 131 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SMAD7O15105 426 aaKnown RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 UGT2B11O75310 529 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 ATP5HO75947 161 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SASH3O75995 380 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 TGDSO95455 350 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 METTL18O95568 372 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 ZNF143P52747 638 aaPredicted RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 GP2P55259 537 aaKnown RBP3.91□□□□□ -1.78
USH2A-202ENST00000366942 CDKL1Q00532 357 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 NKG7Q16617 165 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 MS4A13Q5J8X5 152 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 GPR157Q5UAW9 335 aa3.91□□□□□ -1.78
USH2A-202ENST00000366942 SMIM15Q7Z3B0 74 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms