RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RSPO3Q9BXY4 272 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF556Q9HAH1 456 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 NEUROD4Q9HD90 331 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 AMBNQ9NP70 447 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 FKBP14Q9NWM8 211 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 TEX10Q9NXF1 929 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 LMCD1Q9NZU5 365 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 SNX11Q9Y5W9 270 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 IGKV1-8A0A0C4DH67 115 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 A0A1W2PP55 124 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 M0R3G1 203 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 POU2F1P14859 743 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 CBLP22681 906 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 TGFBR2P37173 567 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 ERVK-21P61565 698 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 KCNC4Q03721 635 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 DMPKQ09013 629 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 ENPP2Q13822 863 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 KIAA1161Q6NSJ0 714 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 GGHQ92820 318 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 OSGEPL1Q9H4B0 414 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 FAIMQ9NVQ4 179 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 RHCGQ9UBD6 479 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 PNMA8BQ9ULN7 279 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 CLCA1A8K7I4 914 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 C5orf58C9J3I9 102 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 FFAR1O14842 300 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 LATO43561 262 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 CCNB2O95067 398 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF12P17014 697 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 NR1D2Q14995 579 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 MAPK11Q15759 364 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 PHF10Q8WUB8 498 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 PROX1Q92786 737 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 RAB8BQ92930 207 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 GTPBP3Q969Y2 492 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 TMEM19Q96HH6 336 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 CAMK1GQ96NX5 476 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 XKR8Q9H6D3 395 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 DDX31Q9H8H2 851 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 SELENONQ9NZV5 590 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 ADAM29Q9UKF5 820 aa19.79■□□□□ 0.76
CCDC88B-203ENST00000359902 MFN2O95140 757 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 EN2P19622 333 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 C5AR1P21730 350 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 LIM2P55344 173 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 PRDX1Q06830 199 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 SLC44A2Q8IWA5 706 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 TP53I13Q8NBR0 393 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 DENND6BQ8NEG7 585 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 UTP15Q8TED0 518 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 CREB3L4Q8TEY5 395 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 MYDGFQ969H8 173 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 VMP1Q96GC9 406 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF764Q96H86 408 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 ALPK1Q96QP1 1244 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 ALOXE3Q9BYJ1 711 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 RHBDL2Q9NX52 303 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 KCND3Q9UK17 655 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 TRANK1O15050 2925 aa19.78■□□□□ 0.76
CCDC88B-203ENST00000359902 TOR1BO14657 336 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 PPM1DO15297 605 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 GASTP01350 101 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 CD36P16671 472 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 DDX5P17844 614 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 TEAD1P28347 426 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 EIF2DP41214 584 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 NCS1P62166 190 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 OCA2Q04671 838 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 FOXD4Q12950 439 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 SPDYE7PQ495Y7 208 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 OR4C11Q6IEV9 310 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 DEPDC4Q8N2C3 294 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 GPR32P1Q8NGA4 272 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 OR2A1Q8NGT9 310 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 DYNC2LI1Q8TCX1 351 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 RPL3LQ92901 407 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 ZBED6CLQ96FA7 236 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 TEFMQ96QE5 360 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 AICDAQ9GZX7 198 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 HEATR5BQ9P2D3 2071 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 A0A0G2JN53 185 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 HMGN4O00479 90 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 ADH1BP00325 375 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 CDK1P06493 297 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 IDUAP35475 653 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 GSTM5P46439 218 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 TEKQ02763 1124 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF770Q6IQ21 691 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 ADCK2Q7Z695 626 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 IGFN1Q86VF2 1251 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 YAF2Q8IY57 180 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 RAB42Q8N4Z0 105 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 AQP11Q8NBQ7 271 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 FCGR1BQ92637 280 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 PHPT1Q9NRX4 125 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 IMP3Q9NV31 184 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 KCNK6Q9Y257 313 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 B3GNT3Q9Y2A9 372 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 PLEKHM1Q9Y4G2 1056 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms