RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ABHD13Q7L211 337 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SPATA21Q7Z572 469 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CPLX4Q7Z7G2 160 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ANKRD46Q86W74 232 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TICAM1Q8IUC6 712 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 PIP4P2Q8N4L2 257 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 FITM2Q8N6M3 262 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ENDOVQ8N8Q3 282 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 TTC29Q8NA56 475 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 CEP70Q8NHQ1 597 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ACTRT2Q8TDY3 377 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 UBE2E3Q969T4 207 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 REPS1Q96D71 796 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 FAR2Q96K12 515 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ZNF681Q96N22 645 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TRIM55Q9BYV6 548 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 PFDN4Q9NQP4 134 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SAR1AQ9NR31 198 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TXLNGQ9NUQ3 528 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 AIG1Q9NVV5 245 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SIRT5Q9NXA8 310 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 KLHL14Q9P2G3 628 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MKL2Q9ULH7 1088 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MAP4K5Q9Y4K4 846 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 LOC100653049A0A140TA62 436 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 A8MUA0 341 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 KRT34O76011 436 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SEMA3DO95025 777 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ONECUT2O95948 504 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 HSD3B1P14060 373 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 LBPP18428 481 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 NCF2P19878 526 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 HSD3B2P26439 372 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 STAT5AP42229 794 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ALDH9A1P49189 494 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ARFIP2P53365 341 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CASP9P55211 416 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ERVK-8P63133 956 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MRPS35P82673 323 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 C2orf80Q0P641 193 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 EIF3IQ13347 325 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 MAP7Q14244 749 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SPANXN4Q5MJ08 99 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ARHGAP40Q5TG30 622 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 GARNL3Q5VVW2 1013 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 OGFOD2Q6N063 350 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 C6orf15Q6UXA7 325 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 C16orf47Q6ZP98 133 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 ZNF551Q7Z340 670 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 RETREG3Q86VR2 466 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CCDC116Q8IYX3 515 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CLECL1Q8IZS7 167 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ZCCHC7Q8N3Z6 543 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 EFCAB3Q8N7B9 438 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TBC1D20Q96BZ9 403 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RILPQ96NA2 401 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SERINC2Q96SA4 455 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 WDR77Q9BQA1 342 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 RPF2Q9H7B2 306 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 COPS7BQ9H9Q2 264 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 SDR39U1Q9NRG7 319 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 CCDC167Q9P0B6 97 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 IFT80Q9P2H3 777 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 VTI1BQ9UEU0 232 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 NEUROG3Q9Y4Z2 214 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 PCDHGA7Q9Y5G6 932 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RP1L1Q8IWN7 2480 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 IGKV3D-11A0A0A0MRZ8 115 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 IDSB3KWA1 339 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 H0YIG0 161 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 UBDO15205 165 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MAN1A2O60476 641 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RAD1O60671 282 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 ZNF354AO60765 605 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 ERAL1O75616 437 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 FAM107AO95990 144 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 FHP07954 510 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 LIFP15018 202 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CAPN3P20807 821 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CDKN2CP42773 168 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 EMP3P54852 163 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RAB15P59190 212 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 NAA20P61599 178 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 Q0VFX4 171 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MGAT2Q10469 447 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 DUSP8Q13202 625 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 NCF4Q15080 339 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RPS6KA2Q15349 733 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MINDY4Q4G0A6 757 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 VPS26BQ4G0F5 336 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TRMT12Q53H54 448 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 PAGE3Q5JUK9 113 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 OR4F3Q6IEY1 312 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 FAM111BQ6SJ93 734 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 KIRREL2Q6UWL6 708 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 WDR53Q7Z5U6 358 aaPredicted RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 NUDT13Q86X67 352 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 POU5F2Q8N7G0 328 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 BCAS4Q8TDM0 211 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 PTPMT1Q8WUK0 201 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms