RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 DEDD2Q8WXF8 326 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 TMEM80Q96HE8 168 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 DCLRE1CQ96SD1 692 aaKnown RBP9.67□□□□□ -0.86
PTPRA-203ENST00000356147 WRAP53Q9BUR4 548 aaKnown RBP9.67□□□□□ -0.86
PTPRA-203ENST00000356147 ACAT2Q9BWD1 397 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 PRR14Q9BWN1 585 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 SMG9Q9H0W8 520 aaKnown RBP9.67□□□□□ -0.86
PTPRA-203ENST00000356147 ABCG4Q9H172 646 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 C1GALT1Q9NS00 363 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 PLEKHB1Q9UF11 243 aaPredicted RBP9.67□□□□□ -0.86
PTPRA-203ENST00000356147 STUB1Q9UNE7 303 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 LSM2Q9Y333 95 aaKnown RBP9.67□□□□□ -0.86
PTPRA-203ENST00000356147 Q9Y3F1 56 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 ALG5Q9Y673 324 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 ENPP4Q9Y6X5 453 aa9.67□□□□□ -0.86
PTPRA-203ENST00000356147 RTCAO00442 366 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 PRKYO43930 277 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 HPGDSO60760 199 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ZNF821O75541 412 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 C8GP07360 202 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 GJA1P17302 382 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 TUFMP49411 452 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 PIN1Q13526 163 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 CASP12Q6UXS9 341 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 MSANTD1Q6ZTZ1 278 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 Q6ZVL8 140 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 CPA6Q8N4T0 437 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 OR4M1Q8NGD0 313 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 CREB3L4Q8TEY5 395 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 GEMIN6Q8WXD5 167 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 UPF1Q92900 1129 aaKnown RBP eCLIP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 NELL2Q99435 816 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 TTLL2Q9BWV7 592 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 HDHD5Q9BXW7 423 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SPNS1Q9H2V7 528 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 MVB12BQ9H7P6 319 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 GALNT9Q9HCQ5 603 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ACOXLQ9NUZ1 547 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 MCUBQ9NWR8 336 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 B4GALT6Q9UBX8 382 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ZNF282Q9UDV7 671 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 A0A1W2PQ72 361 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ANKDD1BA6NHY2 528 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 DVL2O14641 736 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ZNF780AO75290 641 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 PSIP1O75475 530 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ATP1B2P14415 290 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SERPINA4P29622 427 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 TIA1P31483 386 aaKnown RBP eCLIP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SOX18P35713 384 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ALDH9A1P49189 494 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 HNMTP50135 292 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 XKP51811 444 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 FAPQ12884 760 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 LRRC32Q14392 662 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 GLYR1Q49A26 553 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SLC35F1Q5T1Q4 408 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 DPY19L3Q6ZPD9 716 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 COMMD6Q7Z4G1 85 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 CHST14Q8NCH0 376 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 OR4D11Q8NGI4 311 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SETD6Q8TBK2 473 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 POP5Q969H6 163 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 PLD4Q96BZ4 506 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 PPCDCQ96CD2 204 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 MTERF3Q96E29 417 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 KLF16Q9BXK1 252 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 STOX2Q9P2F5 926 aaPredicted RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 DKK3Q9UBP4 350 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 SEC14L4Q9UDX3 406 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 BTNL2Q9UIR0 455 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 TMCC3Q9ULS5 477 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 HELZP42694 1942 aaKnown RBP9.66□□□□□ -0.86
PTPRA-203ENST00000356147 ALPK3Q96L96 1907 aa9.66□□□□□ -0.86
PTPRA-203ENST00000356147 HYKKA2RU49 373 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 TSPAN6O43657 245 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 ELNP15502 786 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 PXNP49023 591 aaPredicted RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 CTSCP53634 463 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 RBBP4Q09028 425 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 LMAN2Q12907 356 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 RETSATQ6NUM9 610 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 TMC8Q8IU68 726 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 AUTS2Q8WXX7 1259 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 TM9SF4Q92544 642 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 C11orf24Q96F05 449 aaPredicted RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 ZBED6CLQ96FA7 236 aaPredicted RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 MAP6Q96JE9 813 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 MAPKAP1Q9BPZ7 522 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 C2orf49Q9BVC5 232 aaPredicted RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 ZNF717Q9BY31 904 aaPredicted RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 POLR2J3Q9H1A7 115 aaKnown RBP9.65□□□□□ -0.86
PTPRA-203ENST00000356147 MTG2Q9H4K7 406 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 VCANP13611 3396 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 TMEM189-UBE2V1I3L0A0 370 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 GFYI3L273 518 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 SGTAO43765 313 aa9.65□□□□□ -0.86
PTPRA-203ENST00000356147 PRMT3O60678 531 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms