RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PLPP5Q8NEB5 264 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 PPHLN1Q8NEY8 458 aaKnown RBP10.43□□□□□ -0.74
RTN3-204ENST00000354497 OR5T3Q8NGG3 340 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 SPATA3Q8NHX4 192 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 CREB3L4Q8TEY5 395 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 CCDC138Q96M89 665 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 STMN4Q9H169 189 aaPredicted RBP10.43□□□□□ -0.74
RTN3-204ENST00000354497 P2RY12Q9H244 342 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 TRIM45Q9H8W5 580 aaPredicted RBP10.43□□□□□ -0.74
RTN3-204ENST00000354497 NEUROD4Q9HD90 331 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 NMRK1Q9NWW6 199 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 GIN1Q9NXP7 522 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 FBXW2Q9UKT8 454 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 CBLCQ9ULV8 474 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 ERVK-11Q9UQG0 969 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 REXO2Q9Y3B8 237 aaKnown RBP10.43□□□□□ -0.74
RTN3-204ENST00000354497 ABCA4P78363 2273 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 SCN2AQ99250 2005 aa10.43□□□□□ -0.74
RTN3-204ENST00000354497 TRBV11-1A0A0K0K1C0 115 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 CDK2AP1O14519 115 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 BCKDKO14874 412 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 SMAD7O15105 426 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 CD3EAPO15446 510 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 NIPSNAP2O75323 286 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 CATP04040 527 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 ERGP11308 486 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 ZNF12P17014 697 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 ENPP1P22413 925 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 ADRA1DP25100 572 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 FMO4P31512 558 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 ADH7P40394 386 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 CETN2P41208 172 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 GDF10P55107 478 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 RPS15AP62244 130 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 OLR1P78380 273 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 ZNF844Q08AG5 666 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 RCN2Q14257 317 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 PCBP2Q15366 365 aaKnown RBP eCLIP10.42□□□□□ -0.743e-35■■■■■ 31.2
RTN3-204ENST00000354497 FLYWCH1Q4VC44 716 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 TMEM214Q6NUQ4 689 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 AADACL2Q6P093 401 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 VN1R4Q7Z5H5 301 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 PATL1Q86TB9 770 aaKnown RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 ZFP62Q8NB50 900 aaPredicted RBP10.42□□□□□ -0.74
RTN3-204ENST00000354497 KCT2Q8NC54 265 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 CAMKVQ8NCB2 501 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 VPS37AQ8NEZ2 397 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 MED30Q96HR3 178 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 PTCHD1Q96NR3 888 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 LANCL2Q9NS86 450 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 KCMF1Q9P0J7 381 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 TCAF1Q9Y4C2 921 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 FAM215AQ9Y5M1 114 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 LIPGQ9Y5X9 500 aa10.42□□□□□ -0.74
RTN3-204ENST00000354497 FEZF1A0PJY2 475 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 PINLYPA6NC86 204 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 SAGE2PA6NJ88 616 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 FAM47E-STBD1D6RA91 191 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 G3V3Y1 287 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 PDE5AO76074 875 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 MATN4O95460 622 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 SLC16A8O95907 504 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 FHP07954 510 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 CHRM3P20309 590 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 JAK1P23458 1154 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 TACR1P25103 407 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 HOXC12P31275 282 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 HSD17B2P37059 387 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 NKX6-1P78426 367 aaPredicted RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 BASP1P80723 227 aaKnown RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 PPP2R2BQ00005 443 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 ARHGAP19Q14CB8 494 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 TCEAL1Q15170 157 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 KLHL38Q2WGJ6 581 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 CTSL3PQ5NE16 218 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 C1orf185Q5T7R7 199 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 ASPGQ86U10 573 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 LRRC6Q86X45 466 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 GRAMD2AQ8IUY3 354 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 FBXO15Q8NCQ5 510 aaPredicted RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 LRRC8CQ8TDW0 803 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 ZNF480Q8WV37 535 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 LRRC46Q96FV0 321 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 OR1F2PQ96R84 312 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 KLHL4Q9C0H6 718 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 EXO5Q9H790 373 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 NKX1-2Q9UD57 310 aaPredicted RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 ACAD8Q9UKU7 415 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 TFR2Q9UP52 801 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 IKBKGQ9Y6K9 419 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 E7ENX8 843 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 PSIP1O75475 530 aaKnown RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 ITGA10O75578 1167 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 NUDT17P0C025 328 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 RPS3P23396 243 aaKnown RBP eCLIP10.41□□□□□ -0.741e-6■■■■□ 22
RTN3-204ENST00000354497 CTNNA1P35221 906 aaKnown RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 COILP38432 576 aaPredicted RBP10.41□□□□□ -0.74
RTN3-204ENST00000354497 GRIA1P42261 906 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 MAGEA1P43355 309 aa10.41□□□□□ -0.74
RTN3-204ENST00000354497 TMED10P49755 219 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms