RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SPATA19Q7Z5L4 167 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PTOV1Q86YD1 416 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 FAM47BQ8NA70 645 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 C1orf216Q8TAB5 229 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF417Q8TAU3 575 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 NSMAFQ92636 917 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF587Q96SQ5 575 aaPredicted RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ETNK2Q9NVF9 386 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ING3Q9NXR8 418 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 KLHL9Q9P2J3 617 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 M0R1B8 84 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PF4P02776 101 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 IL3RAP26951 378 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 HTR1EP28566 365 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 CRADDP78560 199 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 TSTD2Q5T7W7 516 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 AGAP6Q5VW22 663 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ABHD17CQ6PCB6 329 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 OR56A1Q8NGH5 318 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ERVMER34-1Q9H9K5 563 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PTPRHQ9HD43 1115 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 MTO1Q9Y2Z2 717 aaKnown RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 SLC22A23A1A5C7 686 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 NPEPPSL1A6NEC2 478 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 K7EPI3 171 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PGM3O95394 542 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PVRP15151 417 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF20P17024 532 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 HSPA7P48741 367 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 POLE2P56282 527 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 IFI35P80217 286 aaPredicted RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 C10orf62Q5T681 223 aaPredicted RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 MRPL21Q7Z2W9 205 aaKnown RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 BANPQ8N9N5 519 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 OR1E3Q8WZA6 343 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 MKRN2Q9H000 416 aaKnown RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 FN3KQ9H479 309 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM45AQ9NWC5 275 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 CLEC4AQ9UMR7 237 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 A0A1W2PPL8 197 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 J3KR12 359 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 MFSD11O43934 449 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PCSK6P29122 969 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 CRISP3P54108 245 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF730Q6ZMV8 503 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 VSTM4Q8IW00 320 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 APH1AQ96BI3 265 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PKP4Q99569 1192 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 PACSIN1Q9BY11 444 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 EXOSC4Q9NPD3 245 aaKnown RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 RPS6KA6Q9UK32 745 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 KLK13Q9UKR3 277 aa8.01□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF490Q9ULM2 529 aaPredicted RBP8.01□□□□□ -1.13
HMGB1-203ENST00000341423 BTAF1O14981 1849 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 STRCQ7RTU9 1775 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 EIF3HO15372 352 aaKnown RBP eCLIP8□□□□□ -1.13
HMGB1-203ENST00000341423 HAUS5O94927 633 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 NME5P56597 212 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 NTRK3Q16288 839 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 CARD17Q5XLA6 110 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 GRHL2Q6ISB3 625 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 UNC5AQ6ZN44 842 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 CPNE9Q8IYJ1 553 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 FAM86B1Q8N7N1 296 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 LRRC20Q8TCA0 184 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 PIK3IP1Q96FE7 263 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 RBM24Q9BX46 236 aaKnown RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 RNF38Q9H0F5 515 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 MARCOQ9UEW3 520 aaPredicted RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 G3V2T6 193 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 LSM1O15116 133 aaKnown RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 G6PDP11413 515 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 PORP16435 677 aaPredicted RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 RAB10P61026 200 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 RNASEH2BQ5TBB1 312 aaKnown RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 DEF8Q6ZN54 512 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 MEPCEQ7L2J0 689 aaKnown RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 ZNF440Q8IYI8 595 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 ACTRT2Q8TDY3 377 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 ERGIC2Q96RQ1 377 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 PDCD10Q9BUL8 212 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 C12orf49Q9H741 205 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 TMEM185BQ9H7F4 350 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 LHX9Q9NQ69 397 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 ERVK-18Q9QC07 812 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 METRNQ9UJH8 293 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 SLC22A20A6NK97 555 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 TMIGD3P0DMS9 266 aaPredicted RBP8□□□□□ -1.13
HMGB1-203ENST00000341423 HNRNPLP14866 589 aaKnown RBP eCLIP8□□□□□ -1.132e-8■□□□□ 9.1
HMGB1-203ENST00000341423 THBS2P35442 1172 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 MBTPS1Q14703 1052 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 RIPOR1Q6ZS17 1223 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 MMP21Q8N119 569 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 GATSQ8NAP1 163 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 OR8K3Q8NH51 312 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 OR51Q1Q8NH59 317 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 OMA1Q96E52 524 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 PIGUQ9H490 435 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 TNFRSF19Q9NS68 423 aa8□□□□□ -1.13
HMGB1-203ENST00000341423 MMACHCQ9Y4U1 282 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms