RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ABHD11Q8NFV4 315 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SMPDL3AQ92484 453 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM19Q96HH6 336 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SFXN1Q9H9B4 322 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D23Q9NUY8 699 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 MAPRE3Q9UPY8 281 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3DA0A087WVF3 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3IA0A087WXS9 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3EA0A087X179 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3KA0A087X1G2 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 A0A1W2PPV9 198 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3FA6NER0 549 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3LB9A6J9 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 NDUFS4O43181 175 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 B4GALT2O60909 372 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 CLPXO76031 633 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3HP0C7X1 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 DDCP20711 480 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 RAB8AP61006 207 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 FCHO2Q0JRZ9 810 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 NR1D2Q14995 579 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3GQ6DHY5 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3CQ6IPX1 549 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 DHRS4L2Q6PKH6 230 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 KLHL17Q6TDP4 642 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ADAMTSL4Q6UY14 1074 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 C6orf120Q7Z4R8 191 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 MEX3DQ86XN8 651 aaKnown RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D3Q8IZP1 549 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 GOT1L1Q8NHS2 421 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 CXorf40BQ96DE9 158 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PLEKHA8Q96JA3 519 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 FCRL4Q96PJ5 515 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 HDAC8Q9BY41 377 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 MTIF3Q9H2K0 278 aaKnown RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 DUSP21Q9H596 190 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 LHX9Q9NQ69 397 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 IMPAD1Q9NX62 359 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 FBXW2Q9UKT8 454 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 A0A1W2PQU0 124 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CAPN5O15484 640 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 OR12D1P0DN82 309 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 P2RY8Q86VZ1 359 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 OR8K5Q8NH50 307 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 FNDC8Q8TC99 324 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 DOK4Q8TEW6 326 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 TEFMQ96QE5 360 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 MYADMQ96S97 322 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF556Q9HAH1 456 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ACOT13Q9NPJ3 140 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 C11orf16Q9NQ32 467 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 DUSP12Q9UNI6 340 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 DOLKQ9UPQ8 538 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 FREM2Q5SZK8 3169 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 KMOO15229 486 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 NARSO43776 548 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 SLC28A2O43868 658 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 NADKO95544 446 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 APODP05090 189 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 STSP08842 583 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ARAFP10398 606 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 PCSK2P16519 638 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 UQCRC2P22695 453 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CTSKP43235 329 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ST13P50502 369 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 VASPP50552 380 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 HNRNPFP52597 415 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CLDN2P57739 230 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 FADDQ13158 208 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 PUM1Q14671 1186 aaKnown RBP eCLIP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 SYPL1Q16563 259 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 MICAQ29983 383 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 SOWAHCQ53LP3 525 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 PERM1Q5SV97 790 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 COL21A1Q96P44 957 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 IL4I1Q96RQ9 567 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 TRMT61BQ9BVS5 477 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 RSPO3Q9BXY4 272 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 GPN2Q9H9Y4 310 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CD93Q9NPY3 652 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ACER3Q9NUN7 267 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 IGKV1-8A0A0C4DH67 115 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 TRBV4-1A0A0J9YWV2 114 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ANHXE9PGG2 379 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 GASTP01350 101 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 IFNW1P05000 195 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ATXN8OSP0DMR3 200 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CD36P16671 472 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 RPL3P39023 403 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 LIM2P55344 173 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 CSNK1G2P78368 415 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 EEF1A2Q05639 463 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 HEPACAMQ14CZ8 416 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 DUSP6Q16828 381 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 ZNF630Q2M218 657 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 REEP3Q6NUK4 255 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 WDR53Q7Z5U6 358 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 FBLIM1Q8WUP2 373 aa9.83□□□□□ -0.84
LIMA1-201ENST00000341247 GEMIN6Q8WXD5 167 aaKnown RBP9.83□□□□□ -0.84
LIMA1-201ENST00000341247 HRASLS5Q96KN8 279 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms