RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ARHGEF6Q15052 776 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZXDCQ2QGD7 858 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 SYCE2Q6PIF2 218 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 POF1BQ8WVV4 589 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SLC5A11Q8WWX8 675 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 GGHQ92820 318 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TMEM246Q9BRR3 403 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TMEM106CQ9BVX2 250 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SP140LQ9H930 580 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 PAQR5Q9NXK6 330 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 PTGFRNQ9P2B2 879 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZNF282Q9UDV7 671 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 N6AMT1Q9Y5N5 214 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TRBV4-1A0A0J9YWV2 114 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 IGLON5A6NGN9 336 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 BTN3A3O00478 584 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 SERPINB7O75635 380 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 SOX30O94993 753 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 MRPL3P09001 348 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 ZDHHC11BP0C7U3 371 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 PRR35P0CG20 571 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 ATAT1Q5SQI0 421 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 GALNT12Q8IXK2 581 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 NLGN4YQ8NFZ3 816 aaPredicted RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 FIBINQ8TAL6 211 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.4□□□□□ -0.581e-19■■■■□ 26
USP1-201ENST00000339950 C2orf15Q8WU43 125 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 REPS1Q96D71 796 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 NUS1Q96E22 293 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 ZCCHC2Q9C0B9 1178 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 NMNAT1Q9HAN9 279 aaPredicted RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 SERHLQ9NQF3 203 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 FAM120CQ9NX05 1096 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 TAS2R9Q9NYW1 312 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 MKLN1Q9UL63 735 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 SSR3Q9UNL2 185 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 TMEM189-UBE2V1I3L0A0 370 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 FKTNO75072 461 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 SOCS5O75159 536 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 GASTP01350 101 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 RETP07949 1114 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 CLEC2LP0C7M8 214 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 TIMP2P16035 220 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 SNRPD2P62316 118 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 IL18Q14116 193 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 PARS2Q7L3T8 475 aaKnown RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 ANKRD13BQ86YJ7 626 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 OR4E2Q8NGC2 313 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 OR51L1Q8NGJ5 315 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 C16orf78Q8WTQ4 265 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 CHPT1Q8WUD6 406 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 BTN2A2Q8WVV5 523 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 PIGKQ92643 395 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 OR4K3Q96R72 315 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 TM9SF2Q99805 663 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 NEURL2Q9BR09 285 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 ZNF624Q9P2J8 865 aaPredicted RBP11.4□□□□□ -0.58
USP1-201ENST00000339950 ZNF222Q9UK12 451 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 ENTPD4Q9Y227 616 aa11.4□□□□□ -0.58
USP1-201ENST00000339950 NPIPA5A0A0B4J1W7 369 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 OR6C70A6NIJ9 312 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 NPIPA7E9PJI5 369 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 PDPK1O15530 556 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 NPIPA8P0DM63 369 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 TIE1P35590 1138 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 HNRNPA0Q13151 305 aaKnown RBP11.4□□□□□ -0.59
USP1-201ENST00000339950 GINS1Q14691 196 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 NDUFA5Q16718 116 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 GALNT7Q86SF2 657 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 MUL1Q969V5 352 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 TRIT1Q9H3H1 467 aaKnown RBP11.4□□□□□ -0.59
USP1-201ENST00000339950 CA5BQ9Y2D0 317 aa11.4□□□□□ -0.59
USP1-201ENST00000339950 NDUFS4O43181 175 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CDC123O75794 336 aaPredicted RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 ITGA2P17301 1181 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 LAG3P18627 525 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CELP19835 753 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PLET1Q6UQ28 207 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 USP51Q70EK9 711 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 C6orf120Q7Z4R8 191 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP1-201ENST00000339950 FRMD1Q8N878 549 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 OR8D1Q8WZ84 308 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 RNFT2Q96EX2 444 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 SLC52A3Q9NQ40 469 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PLEKHM1Q9Y4G2 1056 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 SPTBN2O15020 2390 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 BRCA1P38398 1863 aaKnown RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 CASP8AP2Q9UKL3 1982 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PEPDP12955 493 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CBLP22681 906 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CD40LGP29965 261 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 MTA1Q13330 715 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 KHDRBS2Q5VWX1 349 aaKnown RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 STEAP3Q658P3 488 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 CYP4Z2PQ8N1L4 340 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 PAPD5Q8NDF8 572 aaKnown RBP11.39□□□□□ -0.59
USP1-201ENST00000339950 STARD8Q92502 1023 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 RACGAP1Q9H0H5 632 aa11.39□□□□□ -0.59
USP1-201ENST00000339950 TP63Q9H3D4 680 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms