RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DYTNA2CJ06 578 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 COPEO14579 308 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 PROM1O43490 865 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 PRKRAO75569 313 aaKnown RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 MYO1DO94832 1006 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 SEMA3DO95025 777 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 MYL2P10916 166 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 TNFSF10P50591 281 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 GPR143P51810 404 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 KCNC4Q03721 635 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 ZNF169Q14929 603 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 TLR1Q15399 786 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 CCDC153Q494R4 210 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 SGO1Q5FBB7 561 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 TCHHL1Q5QJ38 904 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 ACER2Q5QJU3 275 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 C10orf62Q5T681 223 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 TRABD2AQ86V40 505 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 GPR180Q86V85 440 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 EFCAB3Q8N7B9 438 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 CDYL2Q8N8U2 506 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 ZNF354BQ96LW1 612 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 HBEGFQ99075 208 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 MRPL1Q9BYD6 325 aaKnown RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 ALOXE3Q9BYJ1 711 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 ROPN1BQ9BZX4 212 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 ELOVL6Q9H5J4 265 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 ROPN1Q9HAT0 212 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 ADAP2Q9NPF8 381 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 VTI1BQ9UEU0 232 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 LGALS13Q9UHV8 139 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 ZNF223Q9UK11 482 aaPredicted RBP14.78□□□□□ -0.04
CLN3-201ENST00000333496 ESPL1Q14674 2120 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 EML6Q6ZMW3 1958 aa14.78□□□□□ -0.04
CLN3-201ENST00000333496 GOLGA6L10A6NI86 522 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 FGF17O60258 216 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 GBAP04062 536 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 TNFRSF17Q02223 184 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 ID2Q02363 134 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 BEST3Q8N1M1 668 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 B3GNT7Q8NFL0 401 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 OR1N1Q8NGS0 311 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 SELENOMQ8WWX9 145 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 CCDC126Q96EE4 140 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 TMEM109Q9BVC6 243 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 RPF2Q9H7B2 306 aaKnown RBP14.77□□□□□ -0.04
CLN3-201ENST00000333496 ASF1BQ9NVP2 202 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 MS4A12Q9NXJ0 267 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 TEKT2Q9UIF3 430 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 SNX6Q9UNH7 406 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 SPACA6W5XKT8 324 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 ZGRF1Q86YA3 2104 aa14.77□□□□□ -0.04
CLN3-201ENST00000333496 MYO18BQ8IUG5 2567 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 A0A1W2PR48 441 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 BLACEA4D250 179 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 OR5H15A6NDH6 313 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 WASHC1A8K0Z3 465 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 UBFD1O14562 309 aaKnown RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 MLYCDO95822 493 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 MYZAPP0CAP1 466 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 TPP2P29144 1249 aaPredicted RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 IGLV3-21P80748 117 aaPredicted RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 STX4Q12846 297 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 LCP2Q13094 533 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 ELAVL1Q15717 326 aaKnown RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 MEP1AQ16819 746 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 KRT71Q3SY84 523 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 GPRIN3Q6ZVF9 776 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 NUDT13Q86X67 352 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 OR4N5Q8IXE1 308 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 METTL4Q8N3J2 472 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 BANPQ8N9N5 519 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 PTPMT1Q8WUK0 201 aaPredicted RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 UCN3Q969E3 161 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 BARD1Q99728 777 aaKnown RBP14.77□□□□□ -0.05
CLN3-201ENST00000333496 CDCP1Q9H5V8 836 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 BRF2Q9HAW0 419 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 TMBIM4Q9HC24 238 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 OXSMQ9NWU1 459 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 MKS1Q9NXB0 559 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 PHF11Q9UIL8 331 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 SVILO95425 2214 aa14.77□□□□□ -0.05
CLN3-201ENST00000333496 MANBAO00462 879 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 ZIC2O95409 532 aaPredicted RBP14.76□□□□□ -0.05
CLN3-201ENST00000333496 FAM58BPP0C7Q3 252 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 NAGLUP54802 743 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 TAS2R50P59544 299 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 DNAJB13P59910 316 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 GALNT1Q10472 559 aaPredicted RBP14.76□□□□□ -0.05
CLN3-201ENST00000333496 TBL3Q12788 808 aaKnown RBP14.76□□□□□ -0.05
CLN3-201ENST00000333496 RPUSD3Q6P087 351 aaKnown RBP14.76□□□□□ -0.05
CLN3-201ENST00000333496 CYP20A1Q6UW02 462 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 CROCCP2Q86T23 111 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 RPS19BP1Q86WX3 136 aaKnown RBP14.76□□□□□ -0.05
CLN3-201ENST00000333496 ARMC10Q8N2F6 343 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 SLC5A8Q8N695 610 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 CCNYL1Q8N7R7 359 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 RDH11Q8TC12 318 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 AGAP11Q8TF27 550 aa14.76□□□□□ -0.05
CLN3-201ENST00000333496 ARL8AQ96BM9 186 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms