RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SLC1A7O00341 560 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SEPT4O43236 478 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 KLF1Q13351 362 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 CCINQ13939 588 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 FGFBP1Q14512 234 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 POMZP3Q6PJE2 187 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 UNC5DQ6UXZ4 953 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 OR7D4Q8NG98 312 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 CASTOR1Q8WTX7 329 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 DNTTIP1Q9H147 329 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RXFP3Q9NSD7 469 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 DEC1Q9P2X7 70 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TNS2Q63HR2 1409 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 D6RAR5 112 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF821O75541 412 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 HOXA9P31269 272 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RBP7Q96R05 134 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 PCTPQ9UKL6 214 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 A0A1W2PQH9 124 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 NDUFS4O43181 175 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 PFKLP17858 780 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RAB4AP20338 218 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RAP2BP61225 183 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SFT2D3Q587I9 215 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 KIAA1324Q6UXG2 1013 aaKnown RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 OR8S1Q8NH09 359 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 ZDHHC3Q9NYG2 299 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 EPHA6Q9UF33 1036 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 MOGSQ13724 837 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 MGLLQ99685 303 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SLX4Q8IY92 1834 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 F5H5P2 479 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 PRKCHP24723 683 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 BDKRB2P30411 391 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 GPX6P59796 221 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 MADCAM1Q13477 382 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 PCLAFQ15004 111 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 UAP1L1Q3KQV9 507 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 CEP68Q76N32 757 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 FAM129CQ86XR2 697 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 LINC00116Q8NCU8 138 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF578Q96N58 590 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 CCM2Q9BSQ5 444 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TUBB1Q9H4B7 451 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RPP14O95059 124 aaKnown RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 AK1P00568 194 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RETP07949 1114 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RRAS2P62070 204 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 FAM122CQ6P4D5 195 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 MINDY3Q9H8M7 445 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 IL17AQ16552 155 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 BCL2L15Q5TBC7 163 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF440Q8IYI8 595 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 LURAP1Q96LR2 239 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TP63Q9H3D4 680 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 C14orf119Q9NWQ9 140 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 POLLQ9UGP5 575 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 AHCTF1Q8WYP5 2266 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TISP43B9A030 160 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF808Q8N4W9 903 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 IL31RAQ8NI17 732 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SLC35B2Q8TB61 432 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 RSC1A1Q92681 617 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TAAR8Q969N4 342 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SAMD10Q9BYL1 202 aa13.75□□□□□ -0.21
COL7A1-201ENST00000328333 SRA1Q9HD15 236 aaKnown RBP13.75□□□□□ -0.21
COL7A1-201ENST00000328333 TOXO94900 526 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ALPPL2P10696 532 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 MMP12P39900 470 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 NUDT6P53370 316 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 CEACAM19Q7Z692 300 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 NFKBIDQ8NI38 313 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 RRNAD1Q96FB5 475 aaKnown RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SEZ6LQ9BYH1 1024 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 KCNH6Q9H252 994 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ASF1BQ9NVP2 202 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 SDHAF2Q9NX18 166 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 TDRD6O60522 2096 aaKnown RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 CDHR4A6H8M9 788 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 TMEM150BA6NC51 233 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 LILRB5O75023 590 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 DSC2Q02487 901 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 IRF2BP1Q8IU81 584 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 LILRB4Q8NHJ6 448 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 MCCC2Q9HCC0 563 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GBA2Q9HCG7 927 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 RPS10P5Q9NQ39 176 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 DTLQ9NZJ0 730 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 LYRM1O43325 122 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 MSI1O43347 362 aaKnown RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 NUMBP49757 651 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 DCBLD1Q8N8Z6 715 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 LMLNQ96KR4 655 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 TBX5Q99593 518 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 PTGES2Q9H7Z7 377 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 RNF121Q9H920 327 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 C19orf25Q9UFG5 118 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-201ENST00000328333 GP1BBP13224 206 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 ADRB3P13945 408 aa13.74□□□□□ -0.21
COL7A1-201ENST00000328333 PLA2G16P53816 162 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms