RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FOXD3Q9UJU5 478 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 BOKQ9UMX3 212 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 MPDZO75970 2070 aa13.66□□□□□ -0.22
CCDC88B-201ENST00000301897 NPEPPSL1A6NEC2 478 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 A6NNC1 897 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 C17orf105B2RV13 164 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 CDC7O00311 574 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 DVL2O14641 736 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 DNALI1O14645 258 aaPredicted RBP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 DRD2P14416 443 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 ADH7P40394 386 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC6A12P48065 614 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 DGKQP52824 942 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 FRG1Q14331 258 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 FLYWCH1Q4VC44 716 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 PIGGQ5H8A4 983 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC22A10Q63ZE4 541 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 LIX1LQ8IVB5 337 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 PDIK1LQ8N165 341 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 TCAIMQ8N3R3 496 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 NUBPLQ8TB37 319 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC22A8Q8TCC7 542 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 RHBDF1Q96CC6 855 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 LRRC39Q96DD0 335 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 MS4A14Q96JA4 679 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 ALKBH4Q9NXW9 302 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 TUBA8Q9NY65 449 aaPredicted RBP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 MTRF1LQ9UGC7 380 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 ASIC3Q9UHC3 531 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 ATG4BQ9Y4P1 393 aa13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-201ENST00000301897 CLGNO14967 610 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 CCL3P10147 92 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 CERS1P27544 350 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 DNASE1L1P49184 302 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 ASCL1P50553 236 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 FOXD4Q12950 439 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 SF3B4Q15427 424 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 CDKL4Q5MAI5 379 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 MAATS1Q7Z4T9 603 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 ART5Q96L15 291 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 RUNDC3BQ96NL0 473 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 CSF3RQ99062 836 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 TBCDQ9BTW9 1192 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 EFCAB11Q9BUY7 163 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 ZFP64Q9NPA5 681 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 ACKR4Q9NPB9 350 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 CRIM1Q9NZV1 1036 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 IKZF3Q9UKT9 509 aa13.64□□□□□ -0.23
CCDC88B-201ENST00000301897 VPS13CQ709C8 3753 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PROM1O43490 865 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 BANF1O75531 89 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 GOSR1O95249 250 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 CELA3AP09093 270 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 UQCRC1P31930 480 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 GDF5P43026 501 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PGGT1BP53609 377 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 KCNJ2P63252 427 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 LAPTM5Q13571 262 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 HIST2H2ACQ16777 129 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 FBXL19-AS1Q494R0 122 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 MSS51Q4VC12 460 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PAGE2BQ5JRK9 111 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 STEAP4Q687X5 459 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 HIST2H2AA3Q6FI13 130 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 CDC20BQ86Y33 519 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 IGDCC3Q8IVU1 814 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 ULK2Q8IYT8 1036 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 LIX1Q8N485 282 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 ACTRT1Q8TDG2 376 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PAQR8Q8TEZ7 354 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 RNASE6Q93091 150 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PTCD3Q96EY7 689 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 CNPPD1Q9BV87 410 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF703Q9H7S9 590 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 POPDC3Q9HBV1 291 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 SH2D2AQ9NP31 389 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 DLL4Q9NR61 685 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 DNAJC11Q9NVH1 559 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 NSMCE4AQ9NXX6 385 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 CNIH4Q9P003 139 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 SLC17A6Q9P2U8 582 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 PLEKHA6Q9Y2H5 1048 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 NINQ8N4C6 2090 aa13.63□□□□□ -0.23
CCDC88B-201ENST00000301897 FAM95CA0A1B0GW59 222 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 AHRRA9YTQ3 701 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 GGT5P36269 586 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ELK3P41970 407 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ASPHQ12797 758 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 MORF4L2Q15014 288 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 DAZAP2Q15038 168 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 TGFBIQ15582 683 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 TSNQ15631 228 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ZNF791Q3KP31 576 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 TMEM35AQ53FP2 167 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 PAMR1Q6UXH9 720 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 BIVMQ86UB2 503 aa13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 ZC3HC1Q86WB0 502 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-201ENST00000301897 KIF18BQ86Y91 864 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms