RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ATG10Q9H0Y0 220 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SLC9A8Q9Y2E8 581 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 CA12O43570 354 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 IGHA2P01877 340 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 EBLN1P0CF75 366 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 OPRD1P41143 372 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TWF1Q12792 350 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 GPR176Q14439 515 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 ZNF730Q6ZMV8 503 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TMEM91Q6ZNR0 172 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 NANOGP1Q8N7R0 232 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SLC9A6Q92581 669 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TMEM43Q9BTV4 400 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 P2RY12Q9H244 342 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 LIN7BQ9HAP6 207 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SLC25A19Q9HC21 320 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 ARL15Q9NXU5 204 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 TVP23BQ9NYZ1 205 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 SH3BP4Q9P0V3 963 aa12.87□□□□□ -0.35
SKA3-201ENST00000298260 PTPRDP23468 1912 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 WASH4PA8MWX3 477 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TNFRSF10BO14763 440 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 RGS11O94810 467 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 THP07101 528 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 PROS1P07225 676 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 AMD1P17707 334 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 CFL1P23528 166 aaKnown RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 GRK1Q15835 563 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 GPR139Q6DWJ6 353 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 MTFR2Q6P444 385 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 KRT74Q7RTS7 529 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 ADGRD2Q7Z7M1 963 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TLK2Q86UE8 772 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TAGAPQ8N103 731 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 GPR156Q8NFN8 814 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 SAP130Q9H0E3 1048 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 CNOT2Q9NZN8 540 aaKnown RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 RAB23Q9ULC3 237 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 PLXNB2O15031 1838 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 HEPACAM2A8MVW5 462 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 HRO43593 1189 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TLX2O43763 284 aaPredicted RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 B4GALT3O60512 393 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 SLC43A1O75387 559 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 MTRF1O75570 445 aaKnown RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 IL1AP01583 271 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 MMP3P08254 477 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 KELP23276 732 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 PXNP49023 591 aaPredicted RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 STK19P49842 368 aaPredicted RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 SEC23BQ15437 767 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 PRAMEF19Q5SWL8 479 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 BHLHB9Q6PI77 547 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 SERPINA9Q86WD7 417 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 LRRC17Q8N6Y2 441 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 OR52H1Q8NGJ2 320 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 KCTD7Q96MP8 289 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 NTMT1Q9BV86 223 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TMED9Q9BVK6 235 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 CINPQ9BW66 212 aaPredicted RBP12.86□□□□□ -0.35
SKA3-201ENST00000298260 MND1Q9BWT6 205 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 TBC1D17Q9HA65 648 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 ING4Q9UNL4 249 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 MAP4K5Q9Y4K4 846 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 OARD1Q9Y530 152 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 PCDHB11Q9Y5F2 797 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 AUP1Q9Y679 476 aa12.86□□□□□ -0.35
SKA3-201ENST00000298260 ANKRD66B4E2M5 251 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 CBX4O00257 560 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 PITPNM1O00562 1244 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 EPOP01588 193 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TPOP07202 933 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 BPIP17213 487 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 HOXD9P28356 352 aaPredicted RBP12.85□□□□□ -0.35
SKA3-201ENST00000298260 PTGER3P43115 390 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 PCBP1Q15365 356 aaKnown RBP eCLIP12.85□□□□□ -0.35
SKA3-201ENST00000298260 IFI44LQ53G44 452 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 GPR155Q7Z3F1 870 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TMEM86AQ8N2M4 240 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 RBPMSQ93062 196 aaKnown RBP12.85□□□□□ -0.35
SKA3-201ENST00000298260 MARVELD3Q96A59 401 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TRPS1Q9UHF7 1281 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 CLEC4AQ9UMR7 237 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 SLC22A14Q9Y267 594 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 GOLGA4Q13439 2230 aaKnown RBP12.85□□□□□ -0.35
SKA3-201ENST00000298260 LOC285556D6RIA3 1793 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 CKAP5Q14008 2032 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 LINC01387J3KSC0 135 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 QSOX1O00391 747 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 PROM1O43490 865 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 ATG13O75143 517 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 TRBC1P01850 177 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 PRPS2P11908 318 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 RPS24P62847 133 aaKnown RBP12.85□□□□□ -0.35
SKA3-201ENST00000298260 HTRA3P83110 453 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 HMGN2P46Q86SG4 172 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 SLC30A8Q8IWU4 369 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 FAM46DQ8NEK8 389 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 WFDC6Q9BQY6 131 aa12.85□□□□□ -0.35
SKA3-201ENST00000298260 DUSP26Q9BV47 211 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms