RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PIP5K1AQ99755 562 aa11.43□□□□□ -0.58
USHBP1-201ENST00000252597 TRIM45Q9H8W5 580 aaPredicted RBP11.43□□□□□ -0.58
USHBP1-201ENST00000252597 CCDC177Q9NQR7 707 aaPredicted RBP11.43□□□□□ -0.58
USHBP1-201ENST00000252597 SNX7Q9UNH6 387 aa11.43□□□□□ -0.58
USHBP1-201ENST00000252597 PIPSLA2A3N6 862 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 PRAMEF25A6NGN4 478 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CXCR2P25025 360 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 HOXC8P31273 242 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 HOXD11P31277 338 aaPredicted RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 BTBD16Q32M84 506 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF438Q7Z4V0 828 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SYNPOQ8N3V7 929 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 DCAF4L2Q8NA75 395 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 BARHL1Q9BZE3 327 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 NKIRAS2Q9NYR9 191 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 STOX2Q9P2F5 926 aaPredicted RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF282Q9UDV7 671 aaPredicted RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SH2B3Q9UQQ2 575 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ASF1AQ9Y294 204 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 FZD6O60353 706 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SCN2BO60939 215 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ADAMTS4O75173 837 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 C8orf89P0DMQ9 161 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 AVPR1BP47901 424 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 DSTNP60981 165 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 HIST2H2AA3Q6FI13 130 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 IL20RBQ6UXL0 311 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF557Q8N988 423 aaPredicted RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 OR8H1Q8NGG4 311 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 GEMIN6Q8WXD5 167 aaKnown RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SNAPC3Q92966 411 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 FRMD6Q96NE9 622 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 OR2A14Q96R47 310 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 OR4K3Q96R72 315 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 EPYCQ99645 322 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 UCK2Q9BZX2 261 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 OR2B2Q9GZK3 357 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 OR2AG1Q9H205 316 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF222Q9UK12 451 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SLC13A4Q9UKG4 626 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ERVW-1Q9UQF0 538 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CMAHPQ9Y471 501 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TRAV6A0A075B6T7 132 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 A0A1W2PPK0 400 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 A0A1W2PQ72 361 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 FEZF1A0PJY2 475 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ISM1B1AKI9 464 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CSO75390 466 aaKnown RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 GCM2O75603 506 aaPredicted RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ALDH1A1P00352 501 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 IFNA14P01570 189 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 IGHA2P01877 340 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 EIF2S1P05198 315 aaKnown RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 HMGA1P17096 107 aaKnown RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CELP19835 753 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 PAX3P23760 479 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TIA1P31483 386 aaKnown RBP eCLIP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 EPHB3P54753 998 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TBPL1P62380 186 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 PRKCDQ05655 676 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 LRRC32Q14392 662 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 GINS1Q14691 196 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 BCL2A1Q16548 175 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 FBXO43Q4G163 708 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CRB2Q5IJ48 1285 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TJAP1Q5JTD0 557 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TUBA3EQ6PEY2 450 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 SMARCD3Q6STE5 483 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 LAPTM4BQ86VI4 370 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 IQCHQ86VS3 1027 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 PCSK9Q8NBP7 692 aaKnown RBP11.42□□□□□ -0.58
USHBP1-201ENST00000252597 FAM46DQ8NEK8 389 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 DNAJB8Q8NHS0 232 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 AP2M1Q96CW1 435 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ANKRA2Q9H9E1 313 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CREBZFQ9NS37 354 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 ACER3Q9NUN7 267 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 TMEM98Q9Y2Y6 226 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CHD7Q9P2D1 2997 aa11.42□□□□□ -0.58
USHBP1-201ENST00000252597 CD8B2A6NJW9 211 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 C12orf71A8MTZ7 269 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 CD8BP10966 210 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 SLC2A2P11168 524 aaPredicted RBP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 ASMTP46597 345 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 CSNK2BP67870 215 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 HEPACAMQ14CZ8 416 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 CHST9Q7L1S5 443 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 UBQLNLQ8IYU4 475 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 TRMT61BQ9BVS5 477 aaKnown RBP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 FNDC11Q9BVV2 318 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 SLC22A4Q9H015 551 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 SPNS1Q9H2V7 528 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 OSGEPL1Q9H4B0 414 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 REEP4Q9H6H4 257 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF334Q9HCZ1 680 aaPredicted RBP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 GPATCH2Q9NW75 528 aa11.41□□□□□ -0.58
USHBP1-201ENST00000252597 ZNF624Q9P2J8 865 aaPredicted RBP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 PRKRAO75569 313 aaKnown RBP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 RPS3P23396 243 aaKnown RBP eCLIP11.41□□□□□ -0.58
USHBP1-201ENST00000252597 SPINT3P49223 89 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms