RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF783Q6ZMS7 281 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 VASH1Q7L8A9 365 aaPredicted RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 LRRTM4Q86VH4 590 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 GPR65Q8IYL9 337 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TP53I13Q8NBR0 393 aaPredicted RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 ASZ1Q8WWH4 475 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 OVCA2Q8WZ82 227 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 NXPE3Q969Y0 559 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 ERVW-1Q9UQF0 538 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TMED5Q9Y3A6 229 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 A0A1B0GVC2 190 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 A6NIN4 97 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PRKYO43930 277 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 NCR1O76036 304 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TNNI3P19429 210 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 HNMTP50135 292 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PCBP3P57721 371 aaKnown RBP10.18□□□□□ -0.78
USP28-201ENST00000003302 RAB33AQ14088 237 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TRAPPC5Q8IUR0 188 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 CPA6Q8N4T0 437 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TAPBPLQ9BX59 468 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 KLHL20Q9Y2M5 609 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 PPIL1Q9Y3C6 166 aa10.18□□□□□ -0.78
USP28-201ENST00000003302 TP53BP1Q12888 1972 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 LILRB5O75023 590 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 GADD45GO95257 159 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 C8AP07357 584 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 CBSLP0DN79 551 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 CBSP35520 551 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 PRIM2P49643 509 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 MLLT1Q03111 559 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 ZNF658BQ4V348 819 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 LIPJQ5W064 366 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 ACSM5Q6NUN0 579 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 LYPD8Q6UX82 237 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 PAMR1Q6UXH9 720 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 DEF8Q6ZN54 512 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 TCEANCQ8N8B7 351 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 OR56A3Q8NH54 315 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 SMAP2Q8WU79 429 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 S100ZQ8WXG8 99 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 VPS35Q96QK1 796 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 NXF2Q9GZY0 626 aaKnown RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 POLMQ9NP87 494 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 DMRT3Q9NQL9 472 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 TMPRSS11DO60235 418 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 CYP17A1P05093 508 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 RPLP0P05388 317 aaKnown RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 MSL3P1P0C860 447 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 SERPINB1P30740 379 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 EPHB3P54753 998 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 ELP6Q0PNE2 266 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 TRIM60Q495X7 471 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 LIPIQ6XZB0 460 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 LRRC56Q8IYG6 542 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 TMEM159Q96B96 161 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 AP2M1Q96CW1 435 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 ADPRHL2Q9NX46 363 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 IMPAD1Q9NX62 359 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 CRYBB2P43320 205 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 ERVFC1P60507 584 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 ZNF763Q0D2J5 394 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 SYTL3Q4VX76 610 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 C11orf96Q7Z7L8 435 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 TCEAL8Q8IYN2 117 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 SLC34A3Q8N130 599 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 OR6F1Q8NGZ6 308 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 BTN2A2Q8WVV5 523 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 JPH3Q8WXH2 748 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 CLP1Q92989 425 aaKnown RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 GLYATL1Q969I3 302 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 TRNT1Q96Q11 434 aaKnown RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 REEP4Q9H6H4 257 aa10.17□□□□□ -0.78
USP28-201ENST00000003302 C6orf106Q9H6K1 298 aaPredicted RBP10.17□□□□□ -0.78
USP28-201ENST00000003302 SMLR1H3BR10 107 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 KPNA3O00505 521 aaPredicted RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 IFI44LQ53G44 452 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 PTCHD4Q6ZW05 846 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 USP43Q70EL4 1123 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 CCDC190Q86UF4 302 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 TRIM48Q8IWZ4 208 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 OR8H2Q8N162 312 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 TMEM19Q96HH6 336 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 RC3H2Q9HBD1 1191 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 CREBZFQ9NS37 354 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 LSM2Q9Y333 95 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 ZAR1LA6NP61 321 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 PRRT4C9JH25 899 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 HRO43593 1189 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 PI15O43692 258 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 CHI3L1P36222 383 aaPredicted RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 ETV5P41161 510 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 MAN2A2P49641 1150 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 ETV1P50549 477 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 CSTF3Q12996 717 aaKnown RBP10.16□□□□□ -0.78
USP28-201ENST00000003302 RSPRY1Q96DX4 576 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 TMEM175Q9BSA9 504 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 MIXL1Q9H2W2 232 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 EGLN3Q9H6Z9 239 aa10.16□□□□□ -0.78
USP28-201ENST00000003302 TMEM39AQ9NV64 488 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms