RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 BIRC7Q96CA5 298 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 BOD1Q96IK1 185 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DPH2Q9BQC3 489 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 LRFN3Q9BTN0 628 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PRSS16Q9NQE7 514 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 LOXHD1Q8IVV2 1947 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C2orf92A0A1B0GVN3 265 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ANKRD34BA5PLL1 514 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SLC33A1O00400 549 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TNFRSF10CO14798 259 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CALCAP01258 141 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IFNA2P01563 188 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF35P13682 527 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 LHCGRP22888 699 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SERPINB5P36952 375 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MAGEA8P43361 318 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SIRPAP78324 504 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CTBSQ01459 385 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MPP2Q14168 576 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PTCHD3Q3KNS1 767 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 KIAA0930Q6ICG6 404 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 KDELC1Q6UW63 502 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GCNT7Q6ZNI0 430 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RINLQ6ZS11 566 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GALNT12Q8IXK2 581 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GALNT6Q8NCL4 622 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SLC38A4Q969I6 547 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF578Q96N58 590 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MEAF6Q9HAF1 191 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PRDM6Q9NQX0 595 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DNAJB11Q9UBS4 358 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 REV1Q9UBZ9 1251 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CLEC4AQ9UMR7 237 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 MPPED1O15442 326 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SERPINE1P05121 402 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PRPS2P11908 318 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CHMP24386 653 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CRISP3P54108 245 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 NAGLUP54802 743 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GNB2P62879 340 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HTRA4P83105 476 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SP140Q13342 867 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LIPNQ5VXI9 398 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FBXL14Q8N1E6 418 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DTX3Q8N9I9 347 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 OR8S1Q8NH09 359 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC2A12Q8TD20 617 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HCAR1Q9BXC0 346 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HOXD1Q9GZZ0 328 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MMADHCQ9H3L0 296 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TCF7L2Q9NQB0 619 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 KCTD3Q9Y597 815 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 USP54Q70EL1 1684 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ARID1AO14497 2285 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1B0GVC2 190 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CCDC182A6NF36 153 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 AZIN1O14977 448 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FCGR2AP12318 317 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CDH1P12830 882 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CAPGP40121 348 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 EIF1AXP47813 144 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TEKQ02763 1124 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SEMA5AQ13591 1074 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC30A8Q8IWU4 369 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TTC9BQ8N6N2 239 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 BHLHE22Q8NFJ8 381 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SETD6Q8TBK2 473 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ACMSDQ8TDX5 336 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CLEC4CQ8WTT0 213 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC35F5Q8WV83 523 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GRIP2Q9C0E4 1043 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ACP6Q9NPH0 428 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 NANSQ9NR45 359 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ARHGAP20Q9P2F6 1191 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC7A11Q9UPY5 501 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 COL18A1P39060 1754 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 BLACEA4D250 179 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FOXO6A8MYZ6 492 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 H3BML4 177 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SAP18O00422 153 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PLK4O00444 970 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GABRDO14764 452 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MYL12BO14950 172 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SP9P0CG40 484 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TIMP2P16035 220 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 XKP51811 444 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 RPS13P62277 151 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 INCA1Q0VD86 236 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ATP1A4Q13733 1029 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CSRP2Q16527 193 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 NKAIN1Q4KMZ8 207 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 KCTD18Q6PI47 426 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 QSOX2Q6ZRP7 698 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC70Q7Z2Q7 622 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TRAPPC6BQ86SZ2 158 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 OR56A1Q8NGH5 318 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FBXW5Q969U6 566 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GAL3ST3Q96A11 431 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SCRN2Q96FV2 425 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CCDC167Q9P0B6 97 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms