RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PTPMT1Q8WUK0 201 aaPredicted RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 DAZLQ92904 295 aaKnown RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 QRFPRQ96P65 431 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 GPATCH1Q9BRR8 931 aaKnown RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 ALOXE3Q9BYJ1 711 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 OR8D2Q9GZM6 311 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 EXO5Q9H790 373 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 GRPEL1Q9HAV7 217 aa17.96■□□□□ 0.47
CLN3-262ENST00000637699 CORO1CQ9ULV4 474 aaPredicted RBP17.96■□□□□ 0.47
CLN3-262ENST00000637699 A0A088AWK7 358 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 CYR61O00622 381 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 ZNF354AO60765 605 aaPredicted RBP17.95■□□□□ 0.46
CLN3-262ENST00000637699 CTNSO60931 367 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 TNNI3P19429 210 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 ZNF10P21506 573 aaPredicted RBP17.95■□□□□ 0.46
CLN3-262ENST00000637699 CERS1P27544 350 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 KIR2DL3P43628 341 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 LIM2P55344 173 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 STX4Q12846 297 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 C1orf185Q5T7R7 199 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 WLSQ5T9L3 541 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 MMP21Q8N119 569 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 SLCO2A1Q92959 643 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 CFAP36Q96G28 342 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 NAT9Q9BTE0 207 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 PLAC1Q9HBJ0 212 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 SEMA4BQ9NPR2 832 aaPredicted RBP17.95■□□□□ 0.46
CLN3-262ENST00000637699 SACM1LQ9NTJ5 587 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 TUBA8Q9NY65 449 aaPredicted RBP17.95■□□□□ 0.46
CLN3-262ENST00000637699 VTI1BQ9UEU0 232 aa17.95■□□□□ 0.46
CLN3-262ENST00000637699 ANKDD1BA6NHY2 528 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 SUSD5O60279 629 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 WDR1O75083 606 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 P04436 131 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 CCL3P10147 92 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 ZNF37AP17032 561 aaPredicted RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 RNF4P78317 190 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 FOXO1Q12778 655 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 FOXD4Q12950 439 aaPredicted RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 PPP1R7Q15435 360 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 SLC25A35Q3KQZ1 300 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 TRIM40Q6P9F5 258 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 TRMT10BQ6PF06 316 aaKnown RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 KRT78Q8N1N4 520 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 GOLM1Q8NBJ4 401 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 OR2L5Q8NG80 312 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 OR14A16Q8NHC5 309 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 GRK7Q8WTQ7 553 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 SARAFQ96BY9 339 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 PBKQ96KB5 322 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 SGCZQ96LD1 299 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 SERINC2Q96SA4 455 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 REXO4Q9GZR2 422 aaKnown RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 CLEC4MQ9H2X3 399 aaPredicted RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 GSX1Q9H4S2 264 aaPredicted RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 COPS7BQ9H9Q2 264 aaPredicted RBP17.94■□□□□ 0.46
CLN3-262ENST00000637699 DAPP1Q9UN19 280 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 PLEKHA6Q9Y2H5 1048 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 OARD1Q9Y530 152 aa17.94■□□□□ 0.46
CLN3-262ENST00000637699 HRNRQ86YZ3 2850 aaPredicted RBP17.93■□□□□ 0.46
CLN3-262ENST00000637699 TRGV5A0A0B4J1U4 118 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 C17orf105B2RV13 164 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 CLEC3AO75596 197 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 TBX6O95947 436 aaPredicted RBP17.93■□□□□ 0.46
CLN3-262ENST00000637699 DNASE1P24855 282 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 UQCRC1P31930 480 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 HNMTP50135 292 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 MTTPP55157 894 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 CDKL1Q00532 357 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 ZNF460Q14592 562 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 HYAL4Q2M3T9 481 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 ABHD17CQ6PCB6 329 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 OPN5Q6U736 354 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 FRA10AC1Q70Z53 315 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 NKAPQ8N5F7 415 aaKnown RBP17.93■□□□□ 0.46
CLN3-262ENST00000637699 SLC2A12Q8TD20 617 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 RMND5BQ96G75 393 aaPredicted RBP17.93■□□□□ 0.46
CLN3-262ENST00000637699 NAP1L3Q99457 506 aaPredicted RBP17.93■□□□□ 0.46
CLN3-262ENST00000637699 RASSF1Q9NS23 344 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 CRIM1Q9NZV1 1036 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 ASIC3Q9UHC3 531 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 ATG4BQ9Y4P1 393 aa17.93■□□□□ 0.46
CLN3-262ENST00000637699 SYNDIG1LA6NDD5 238 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 PGRMC1O00264 195 aaKnown RBP17.92■□□□□ 0.46
CLN3-262ENST00000637699 DNALI1O14645 258 aaPredicted RBP17.92■□□□□ 0.46
CLN3-262ENST00000637699 PROM1O43490 865 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 LDB3O75112 727 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 PIGAP37287 484 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 ID2Q02363 134 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 RCN2Q14257 317 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 EFTUD2Q15029 972 aaKnown RBP eCLIP17.92■□□□□ 0.463e-6■■■■□ 22
CLN3-262ENST00000637699 TSNQ15631 228 aaKnown RBP17.92■□□□□ 0.46
CLN3-262ENST00000637699 ADPRMQ3LIE5 342 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 ADNP2Q6IQ32 1131 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 VN1R5Q7Z5H4 357 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 OR5L2Q8NGL0 311 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 OR8K3Q8NH51 312 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 RHBDF1Q96CC6 855 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 RUNDC3BQ96NL0 473 aa17.92■□□□□ 0.46
CLN3-262ENST00000637699 F2RL3Q96RI0 385 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms