RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CASP9P55211 416 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 LIM2P55344 173 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 HSD11B2P80365 405 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 DAB2P98082 770 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 MSANTD1Q6ZTZ1 278 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 C10orf90Q96M02 699 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 GBP5Q96PP8 586 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 CPPED1Q9BRF8 314 aaPredicted RBP19.02■□□□□ 0.64
CLN3-250ENST00000636839 ATAD3AQ9NVI7 634 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 IRAK4Q9NWZ3 460 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 UTS2RQ9UKP6 389 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 MAPRE3Q9UPY8 281 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 URADA6NGE7 173 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 SRPX2O60687 465 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 GALR3O60755 368 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 KRT36O76013 467 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 C8orf89P0DMQ9 161 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 DUSP2Q05923 314 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ANXA8L1Q5VT79 327 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 METTL27Q8N6F8 245 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 ZNF655Q8N720 491 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 OR10A6Q8NH74 314 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 SERINC2Q96SA4 455 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ALG2Q9H553 416 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 WBP11Q9Y2W2 641 aaKnown RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 SCN2AQ99250 2005 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 A0A0A6YYC8 382 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 A0A1W2PRB8 838 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 FAM227AF5H4B4 570 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 I3L1I5 382 aaPredicted RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 NVLO15381 856 aaKnown RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 B3GALT2O43825 422 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 RDH16O75452 317 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ATP6V1G2O95670 118 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 TRPC1P48995 793 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 OR4D2P58180 307 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 TRIM25Q14258 630 aaKnown RBP19.01■□□□□ 0.63
CLN3-250ENST00000636839 MANEAQ5SRI9 462 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 TMEM71Q6P5X7 295 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 CYP2R1Q6VVX0 501 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 SUMF1Q8NBK3 374 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 VPS37AQ8NEZ2 397 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 OR6C4Q8NGE1 309 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ZNF583Q96ND8 569 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ZNF285Q96NJ3 590 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 LRRN3Q9H3W5 708 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 ACSL6Q9UKU0 697 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 CES1P1Q9UKY3 287 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 DAPP1Q9UN19 280 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 SLC22A7Q9Y694 548 aa19.01■□□□□ 0.63
CLN3-250ENST00000636839 H0Y3Z8 333 aa19■□□□□ 0.63
CLN3-250ENST00000636839 CDX4O14627 284 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 FOXS1O43638 330 aa19■□□□□ 0.63
CLN3-250ENST00000636839 ERAL1O75616 437 aaKnown RBP19■□□□□ 0.63
CLN3-250ENST00000636839 NCK1P16333 377 aa19■□□□□ 0.63
CLN3-250ENST00000636839 RPL3P39023 403 aaKnown RBP19■□□□□ 0.63
CLN3-250ENST00000636839 ARL4DP49703 201 aa19■□□□□ 0.63
CLN3-250ENST00000636839 HNRNPFP52597 415 aaKnown RBP19■□□□□ 0.63
CLN3-250ENST00000636839 PCBP4P57723 403 aaKnown RBP19■□□□□ 0.63
CLN3-250ENST00000636839 SIM1P81133 766 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 OR4N5Q8IXE1 308 aa19■□□□□ 0.63
CLN3-250ENST00000636839 TMEM52Q8NDY8 209 aa19■□□□□ 0.63
CLN3-250ENST00000636839 BHLHE22Q8NFJ8 381 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 OR8J3Q8NGG0 315 aa19■□□□□ 0.63
CLN3-250ENST00000636839 OR5AK3PQ8NH89 298 aa19■□□□□ 0.63
CLN3-250ENST00000636839 SLC41A2Q96JW4 573 aa19■□□□□ 0.63
CLN3-250ENST00000636839 NLNQ9BYT8 704 aa19■□□□□ 0.63
CLN3-250ENST00000636839 SEMA5BQ9P283 1151 aa19■□□□□ 0.63
CLN3-250ENST00000636839 NKX1-2Q9UD57 310 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 MYOCOSA0A1B0GUC4 107 aa19■□□□□ 0.63
CLN3-250ENST00000636839 C1orf226A1L170 272 aa19■□□□□ 0.63
CLN3-250ENST00000636839 HYKKA2RU49 373 aa19■□□□□ 0.63
CLN3-250ENST00000636839 TMEM150CB9EJG8 249 aa19■□□□□ 0.63
CLN3-250ENST00000636839 NTRK1P04629 796 aa19■□□□□ 0.63
CLN3-250ENST00000636839 DRD2P14416 443 aa19■□□□□ 0.63
CLN3-250ENST00000636839 TCF15Q12870 199 aa19■□□□□ 0.63
CLN3-250ENST00000636839 FLOT2Q14254 428 aa19■□□□□ 0.63
CLN3-250ENST00000636839 LAIR1Q6GTX8 287 aa19■□□□□ 0.63
CLN3-250ENST00000636839 D2HGDHQ8N465 521 aa19■□□□□ 0.63
CLN3-250ENST00000636839 N4BP2L2Q92802 583 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 CNRIP1Q96F85 164 aaPredicted RBP19■□□□□ 0.63
CLN3-250ENST00000636839 ECSITQ9BQ95 431 aa19■□□□□ 0.63
CLN3-250ENST00000636839 FAIM2Q9BWQ8 316 aa19■□□□□ 0.63
CLN3-250ENST00000636839 SUCOQ9UBS9 1254 aaKnown RBP19■□□□□ 0.63
CLN3-250ENST00000636839 H3BMH7 237 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 CLIC1O00299 241 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 PDPK1O15530 556 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 CPNE6O95741 557 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 HSD17B1P14061 328 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 NELFEP18615 380 aaKnown RBP18.99■□□□□ 0.63
CLN3-250ENST00000636839 CPN2P22792 545 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 FEN1P39748 380 aaKnown RBP18.99■□□□□ 0.63
CLN3-250ENST00000636839 HSPB3Q12988 150 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 PRSS42Q7Z5A4 293 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 OR1L3Q8NH93 324 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 NAT6Q93015 286 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 ASB9Q96DX5 294 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 KCTD14Q9BQ13 255 aaPredicted RBP18.99■□□□□ 0.63
CLN3-250ENST00000636839 CXorf36Q9H7Y0 433 aa18.99■□□□□ 0.63
CLN3-250ENST00000636839 KAT8Q9H7Z6 458 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms