RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 UTP15Q8TED0 518 aaKnown RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 CCDC177Q9NQR7 707 aaPredicted RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 QPCTLQ9NXS2 382 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 KLHL28Q9NXS3 571 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 BOKQ9UMX3 212 aaPredicted RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 TCAF1Q9Y4C2 921 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 MMACHCQ9Y4U1 282 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 HEATR5AQ86XA9 2040 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 AVILO75366 819 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 SERPIND1P05546 499 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CDH1P12830 882 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CHRM3P20309 590 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CRYGSP22914 178 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 RAB8AP61006 207 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 KCNJ2P63252 427 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 PWP1Q13610 501 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 BMPR2Q13873 1038 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 PRAMEF20Q5VT98 475 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 SLC22A10Q63ZE4 541 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 OPN5Q6U736 354 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 LINC00523Q86TU6 105 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 SCUBE1Q8IWY4 988 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 PM20D2Q8IYS1 436 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CA13Q8N1Q1 262 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 ZNF441Q8N8Z8 693 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 LRRC57Q8N9N7 239 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 TMEM171Q8WVE6 324 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 ASB11Q8WXH4 323 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 NTNG2Q96CW9 530 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 MARK4Q96L34 752 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 JSRP1Q96MG2 331 aaPredicted RBP12.72□□□□□ -0.37
SNX1-214ENST00000625244 KCNF1Q9H3M0 494 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CALHM2Q9HA72 323 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 CAPN6Q9Y6Q1 641 aa12.72□□□□□ -0.37
SNX1-214ENST00000625244 SNPHO15079 494 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 PSMD3O43242 534 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 OR1F1O43749 312 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 FTCDO95954 541 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 GRK3P35626 688 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SOX18P35713 384 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 HNF4AP41235 474 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SKIV2L2P42285 1042 aaKnown RBP12.71□□□□□ -0.37
SNX1-214ENST00000625244 SLCO1A2P46721 670 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 HNRNPFP52597 415 aaKnown RBP12.71□□□□□ -0.37
SNX1-214ENST00000625244 GDF10P55107 478 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 COPS2P61201 443 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 FAM27E3Q08E93 113 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SF3B4Q15427 424 aaKnown RBP eCLIP12.71□□□□□ -0.37
SNX1-214ENST00000625244 DCST1Q5T197 706 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 NIPAL1Q6NVV3 410 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 C17orf64Q86WR6 236 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SLC44A1Q8WWI5 657 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 ROBO4Q8WZ75 1007 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 LPGAT1Q92604 370 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 ZBED6CLQ96FA7 236 aaPredicted RBP12.71□□□□□ -0.37
SNX1-214ENST00000625244 WDYHV1Q96HA8 205 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SFXN3Q9BWM7 321 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 CXorf56Q9H5V9 222 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 ADAP2Q9NPF8 381 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 CHRAC1Q9NRG0 131 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 ZNF226Q9NYT6 803 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 CDC42EP3Q9UKI2 254 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 SLC6A5Q9Y345 797 aa12.71□□□□□ -0.37
SNX1-214ENST00000625244 NINQ8N4C6 2090 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 TRRAPQ9Y4A5 3859 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 CTAGE15A4D2H0 777 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 A8MXE2 369 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 C4orf51C9J302 202 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 GFYI3L273 518 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 GAS8O95995 478 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 GDF1P27539 372 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 CPOXP36551 454 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 RNF4P78317 190 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 P3H1Q32P28 736 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 ZNF791Q3KP31 576 aaPredicted RBP12.7□□□□□ -0.38
SNX1-214ENST00000625244 VASNQ6EMK4 673 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 PLXDC2Q6UX71 529 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 SYDE1Q6ZW31 735 aaPredicted RBP12.7□□□□□ -0.38
SNX1-214ENST00000625244 CTAGE6Q86UF2 777 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 MPP5Q8N3R9 675 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 TMEM52Q8NDY8 209 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 NT5CQ8TCD5 201 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 PAQR8Q8TEZ7 354 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 TRIM44Q96DX7 344 aaPredicted RBP12.7□□□□□ -0.38
SNX1-214ENST00000625244 PCBD2Q9H0N5 130 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 KLHL31Q9H511 634 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 CLK4Q9HAZ1 481 aaKnown RBP12.7□□□□□ -0.38
SNX1-214ENST00000625244 LRTM1Q9HBL6 345 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 ZNF148Q9UQR1 794 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 MED12Q93074 2177 aa12.7□□□□□ -0.38
SNX1-214ENST00000625244 MYOCOSA0A1B0GUC4 107 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 TRAPPC6AO75865 159 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 LRATO95237 230 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 SMIM10L1P0DMW3 83 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 RGS1Q08116 209 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 SLC13A2Q13183 592 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 CUL1Q13616 776 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 SEL1L2Q5TEA6 688 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 PPP1R21Q6ZMI0 780 aa12.69□□□□□ -0.38
SNX1-214ENST00000625244 CYHR1Q6ZMK1 362 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms