RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 B3GNT8Q7Z7M8 397 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 FBXL6Q8N531 539 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 HORMAD2Q8N7B1 307 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR9Q2Q8NGE9 314 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR52E1Q8NGJ3 308 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 TEFMQ96QE5 360 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 RSPO3Q9BXY4 272 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 BTBD1Q9H0C5 482 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 IRF2BPLQ9H1B7 796 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 DZANK1Q9NVP4 752 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 DENND4AQ7Z401 1863 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 hCG_2014768A0A024R1R8 64 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 C4orf51C9J302 202 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 TNFRSF11BO00300 401 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 SLC16A6O15403 523 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 RPN2P04844 631 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 BCHEP06276 602 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 HOXB2P14652 356 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 DDCP20711 480 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 CD72P21854 359 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 PPIBP23284 216 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 CCR3P51677 355 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 PRKAG1P54619 331 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 RPP38P78345 283 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 SPIBQ01892 262 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 TP53BP2Q13625 1128 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 SPDYE7PQ495Y7 208 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 RBM48Q5RL73 367 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 TPRG1LQ5T0D9 272 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 TRIM40Q6P9F5 258 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 IL17RCQ8NAC3 791 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 GOT1L1Q8NHS2 421 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 CXorf40BQ96DE9 158 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 NODALQ96S42 347 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 CSF3RQ99062 836 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 YIPF4Q9BSR8 244 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 AHSPQ9NZD4 102 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 CORO2BQ9UQ03 480 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 CAPN5O15484 640 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 NDUFS4O43181 175 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 KLF8O95600 359 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 C9P02748 559 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 C8orf89P0DMQ9 161 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ERGP11308 486 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 HNRNPFP52597 415 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 RAB8AP61006 207 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 PRDX1Q06830 199 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 BNIP3Q12983 259 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 DGCR6Q14129 220 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 SKIV2LQ15477 1246 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 TEAD4Q15561 434 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 UAP1L1Q3KQV9 507 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ZNF793Q6ZN11 406 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 NLGN4XQ8N0W4 816 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 SLC5A8Q8N695 610 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 KIAA1958Q8N8K9 716 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ABHD11Q8NFV4 315 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR4E2Q8NGC2 313 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR5D16Q8NGK9 328 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR13F1Q8NGS4 319 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 OR8K5Q8NH50 307 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 TSACCQ96A04 125 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 ELSPBP1Q96BH3 223 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 PDXPQ96GD0 296 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 NIPSNAP1Q9BPW8 284 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 WFDC6Q9BQY6 131 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 C1QTNF2Q9BXJ5 285 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 YTHDF1Q9BYJ9 559 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 NLNQ9BYT8 704 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ANKRA2Q9H9E1 313 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ACSL5Q9ULC5 683 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 LYVE1Q9Y5Y7 322 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 A0A1W2PQF6 199 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 PCDH17O14917 1159 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ERAL1O75616 437 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 PCSK2P16519 638 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 NTSR1P30989 418 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 BCL6P41182 706 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 SSR2P43308 183 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 RAB28P51157 221 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 LSM3P62310 102 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 SNRPNP63162 240 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 NPRL3Q12980 569 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 ENPP2Q13822 863 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 EXOC3L2Q2M3D2 409 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 FLCNQ8NFG4 579 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 SLC38A5Q8WUX1 472 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 GTPBP3Q969Y2 492 aaKnown RBP10.1□□□□□ -0.79
CUX1-221ENST00000622516 DPH7Q9BTV6 452 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 APOOQ9BUR5 198 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 KLHL25Q9H0H3 589 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 RHBGQ9H310 441 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 WASH6PQ9NQA3 447 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 SLC6A14Q9UN76 642 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 SPTBP11277 2137 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 TICRRQ7Z2Z1 1910 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 HAT1O14929 419 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 PCDHGA12O60330 932 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 CPNE6O95741 557 aa10.1□□□□□ -0.79
CUX1-221ENST00000622516 DCKP27707 260 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms