RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IDNKQ5T6J7 187 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 MZT2AQ6P582 158 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 PAMR1Q6UXH9 720 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 RTN4RL1Q86UN2 441 aaPredicted RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 PTOV1Q86YD1 416 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 NPAS4Q8IUM7 802 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 TRPV1Q8NER1 839 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 UFD1Q92890 307 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 C11orf24Q96F05 449 aaPredicted RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 LRR1Q96L50 414 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 IL17FQ96PD4 163 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 FYTTD1Q96QD9 318 aaKnown RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 CCDC32Q9BV29 185 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ZCCHC3Q9NUD5 404 aaKnown RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 ENPP4Q9Y6X5 453 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 MGAMO43451 1857 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 CYP17A1P05093 508 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 CHMP24386 653 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 SSR2P43308 183 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 DGKGP49619 791 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 CHST14Q8NCH0 376 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ASB11Q8WXH4 323 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 HDHD5Q9BXW7 423 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 MTG2Q9H4K7 406 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 KLHL28Q9NXS3 571 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 GLOD5A6NK44 160 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ARHGEF33A8MVX0 844 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 GASTP01350 101 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 RPS19P39019 145 aaKnown RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 KCNC4Q03721 635 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PIN1Q13526 163 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 CCSMST1Q4G0I0 132 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZMAT1Q5H9K5 638 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 C22orf39Q6P5X5 142 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SMARCD3Q6STE5 483 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 IQCHQ86VS3 1027 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 C17orf64Q86WR6 236 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 GALNT13Q8IUC8 556 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 LILRA3Q8N6C8 439 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 UXS1Q8NBZ7 420 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZNF461Q8TAF7 563 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SLC35B4Q969S0 331 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PLSCR3Q9NRY6 295 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PCDHGB1Q9Y5G3 927 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PRAMEF33A0A0G2JMD5 474 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ORC5O43913 435 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 MRPS14O60783 128 aaKnown RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 PRAMEF10O60809 474 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 IGFBP1P08833 259 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 CLEC2LP0C7M8 214 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SELPP16109 830 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 GRK5P34947 590 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PCGF2P35227 344 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 EIF4EBP2Q13542 120 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZNF362Q5T0B9 420 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 NXNL2Q5VZ03 156 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 LINC00299Q6ZSB3 139 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 CCDC149Q6ZUS6 474 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 CALHM3Q86XJ0 350 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 Q8N402 240 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SLC43A3Q8NBI5 491 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SORCS1Q8WY21 1168 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 UBE2E3Q969T4 207 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZCCHC2Q9C0B9 1178 aaKnown RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 CLEC4MQ9H2X3 399 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 GRIP1Q9Y3R0 1128 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SOCS5O75159 536 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 BMP1P13497 986 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 UGT2B10P36537 528 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 DSC1Q08554 894 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 GDPD4Q6W3E5 623 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SLC37A3Q8NCC5 494 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ATP6V1C2Q8NEY4 427 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 NEIL2Q969S2 332 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SCRN2Q96FV2 425 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 BEX1Q9HBH7 125 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 CCDC59Q9P031 241 aaKnown RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 STOX2Q9P2F5 926 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 ARID1BQ8NFD5 2236 aaPredicted RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZSCAN5BA6NJL1 495 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 GRM6O15303 877 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 BNC1Q01954 994 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 SLAMF1Q13291 335 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIG1-221ENST00000613670 ELMOD2Q8IZ81 293 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 OR52N2Q8NGI0 321 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 WDR48Q8TAF3 677 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 C2orf15Q8WU43 125 aaKnown RBP12.05□□□□□ -0.48
LIG1-221ENST00000613670 TIFAQ96CG3 184 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ZFP3Q96NJ6 502 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 NELL2Q99435 816 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 MED28Q9H204 178 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 KCNK12Q9HB15 430 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 STUB1Q9UNE7 303 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 ING4Q9UNL4 249 aa12.05□□□□□ -0.48
LIG1-221ENST00000613670 QSOX1O00391 747 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 SCAMP1O15126 338 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 PDPK1O15530 556 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 SSNA1O43805 119 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 RHCEP18577 417 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms