RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CABS1Q96KC9 395 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 FER1L6-AS2Q96M78 137 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CMTM3Q96MX0 182 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CD180Q99467 661 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 OPA3Q9H6K4 179 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SEMA4BQ9NPR2 832 aaPredicted RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PFDN4Q9NQP4 134 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PCDHB16Q9NRJ7 776 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SELENONQ9NZV5 590 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 MDFICQ9P1T7 246 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CPSF2Q9P2I0 782 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 STYXL1Q9Y6J8 313 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 IKBKGQ9Y6K9 419 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 GLOD5A6NK44 160 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 K7ERQ8 282 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 STX6O43752 255 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 PRAMEF2O60811 474 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 PMPCBO75439 489 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 TOXO94900 526 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 RASAL1O95294 804 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 PCCBP05166 539 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ANKRD34CP0C6C1 535 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 FAM157CP0CG43 387 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SRCP12931 536 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 UNGP13051 313 aaPredicted RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 TLX1P31314 330 aaPredicted RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 GFERP55789 205 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ILF3Q12906 894 aaKnown RBP eCLIP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SNTB1Q13884 538 aaKnown RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 IRF3Q14653 427 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 MED22Q15528 200 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 WSCD2Q2TBF2 565 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 MS4A13Q5J8X5 152 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 DENND2CQ68D51 928 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 LCN10Q6JVE6 187 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 HEPHL1Q6MZM0 1159 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SHQ1Q6PI26 577 aaKnown RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SARM1Q6SZW1 724 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 RANBP10Q6VN20 620 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SCARA5Q6ZMJ2 495 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 C3P1Q6ZMU1 363 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 KCTD20Q7Z5Y7 419 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ADGRG6Q86SQ4 1221 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 DNAAF5Q86Y56 855 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 NRROSQ86YC3 692 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 LGI2Q8N0V4 545 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 PTGR2Q8N8N7 351 aaPredicted RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 KIAA0895Q8NCT3 520 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 TNIP2Q8NFZ5 429 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 CXorf40AQ8TE69 158 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 UTP15Q8TED0 518 aaKnown RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 AGAP11Q8TF27 550 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 RNF139Q8WU17 664 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 SLC22A18Q96BI1 424 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ELP4Q96EB1 424 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 PERPQ96FX8 193 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 WRAP53Q9BUR4 548 aaKnown RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 MECRQ9BV79 373 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 GSDMCQ9BYG8 508 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 LSG1Q9H089 658 aaKnown RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ZSCAN16Q9H4T2 348 aaPredicted RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 CCDC134Q9H6E4 229 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 KCNJ16Q9NPI9 418 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 YAE1D1Q9NRH1 226 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 DCAF16Q9NXF7 216 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ALKBH4Q9NXW9 302 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 DNAJB11Q9UBS4 358 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 HMGXB4Q9UGU5 601 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 USP22Q9UPT9 525 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.1□□□□□ -1.75
LINC00540-201ENST00000611481 USF3Q68DE3 2245 aa4.1□□□□□ -1.75
LINC00540-201ENST00000611481 A0A0U1RQK1 487 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF320A2RRD8 509 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TRIM49BA6NDI0 452 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 C16orf96A6NNT2 1141 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 IDSB3KWA1 339 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TEX22C9J3V5 150 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 H0YAE9 185 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 CACNB4O00305 520 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 CLDN4O14493 209 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 RGS10O43665 173 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 HNRNPCL1O60812 293 aaKnown RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 KERAO60938 352 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 SEC22BO75396 215 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 WISP2O76076 250 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 GUCA1CO95843 209 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MOCS2O96007 188 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MYBL1P10243 752 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 APEHP13798 732 aaKnown RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 COX7A2P14406 83 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 GAP43P17677 238 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 CD58P19256 250 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 IDSP22304 550 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MAPK3P27361 379 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 CXCR3P49682 368 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 DNA2P51530 1060 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 PLK1P53350 603 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 NUCB2P80303 420 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 GTF2BQ00403 316 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms