RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PSMD12O00232 456 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TM9SF1O15321 606 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 PROM1O43490 865 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 LYPLA1O75608 230 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 C1QL1O75973 258 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 FAM58BPP0C7Q3 252 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF10P21506 573 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 JAK1P23458 1154 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TSFMP43897 325 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ARFIP1P53367 373 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 SOX8P57073 446 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 NAA20P61599 178 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ID2Q02363 134 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 COLEC12Q5KU26 742 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 C10orf62Q5T681 223 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 AGBL2Q5U5Z8 902 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 COMMD6Q7Z4G1 85 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 GPR180Q86V85 440 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 OR4N5Q8IXE1 308 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 MMP21Q8N119 569 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 GALNT16Q8N428 558 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 C1orf52Q8N6N3 182 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 METTL21AQ8WXB1 218 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 PSMF1Q92530 271 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 C11orf24Q96F05 449 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 SH3GL2Q99962 352 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF552Q9H707 407 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF446Q9NWS9 450 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TEX10Q9NXF1 929 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 VPS29Q9UBQ0 182 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 ZDHHC2Q9UIJ5 367 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 TP53TG5Q9Y2B4 290 aa13.33□□□□□ -0.28
SHKBP1-217ENST00000598558 NSG1A0A0A6YYJ2 146 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 A0A1W2PS29 197 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 GLOD5A6NK44 160 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 AZIN1O14977 448 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 PGRMC2O15173 223 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 BIRC5O15392 142 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 FGF17O60258 216 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CTNSO60931 367 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 LDB3O75112 727 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 ZWINTO95229 277 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CYC1P08574 325 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 FGF4P08620 206 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 UROSP10746 265 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 BGNP21810 368 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CPN2P22792 545 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 RRADP55042 308 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 OR4D2P58180 307 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 BTKQ06187 659 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CSTF3Q12996 717 aaKnown RBP13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 RCN2Q14257 317 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CHI3L2Q15782 390 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 PAPD4Q6PIY7 484 aaKnown RBP13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 Q6ZSR9 355 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 HDXQ7Z353 690 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 TRIM46Q7Z4K8 759 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 ZNF595Q8IYB9 648 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 LSM14AQ8ND56 463 aaKnown RBP13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 NFAM1Q8NET5 270 aaPredicted RBP13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 OR2T11Q8NH01 316 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 TM4SF18Q96CE8 201 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 CENPKQ9BS16 269 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 TRMOQ9BU70 441 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 ADNPQ9H2P0 1102 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 FIS1Q9Y3D6 152 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 TRAF6Q9Y4K3 522 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 MMACHCQ9Y4U1 282 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 DNAJC15Q9Y5T4 150 aa13.32□□□□□ -0.28
SHKBP1-217ENST00000598558 AIFM1O95831 613 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 PRR35P0CG20 571 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ITGAMP11215 1152 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 HSD3B1P14060 373 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ITGA3P26006 1051 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 HSD3B2P26439 372 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 HSD17B7P56937 341 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 TNFRSF17Q02223 184 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ASPHQ12797 758 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 AIMP2Q13155 320 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 KANK2Q63ZY3 851 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 DGAT2L6Q6ZPD8 337 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 NUDT13Q86X67 352 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 GBP7Q8N8V2 638 aaPredicted RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 CLEC1AQ8NC01 280 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 AGR3Q8TD06 166 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 MGARPQ8TDB4 240 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 DOK4Q8TEW6 326 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 THOC3Q96J01 351 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 SLC25A23Q9BV35 468 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 RPF2Q9H7B2 306 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 VIPAS39Q9H9C1 493 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ARGLU1Q9NWB6 273 aaPredicted RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 TUBD1Q9UJT1 453 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ADAM29Q9UKF5 820 aa13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 PCDHGA9Q9Y5G4 932 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-217ENST00000598558 ATRXP46100 2492 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 MED13Q9UHV7 2174 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 MKRN2OSH3BPM6 223 aa13.3□□□□□ -0.28
SHKBP1-217ENST00000598558 H3BQF6 201 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms