RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TMEM109Q9BVC6 243 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 PARD6BQ9BYG5 372 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 ROPN1BQ9BZX4 212 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-213ENST00000598355 GSTO2Q9H4Y5 243 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 ROPN1Q9HAT0 212 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-213ENST00000598355 BRF2Q9HAW0 419 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 ADAP2Q9NPF8 381 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 MS4A12Q9NXJ0 267 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 GRID1Q9ULK0 1009 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 STK38LQ9Y2H1 464 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 POLEQ07864 2286 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 PYCARD-AS1I3L0S3 204 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TMPRSS11DO60235 418 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 EEDO75530 441 aaKnown RBP15.09■□□□□ 0.01
TRIM28-213ENST00000598355 SUPT7LO94864 414 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 OR4F21O95013 312 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 MLYCDO95822 493 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 KRT4P19013 534 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TSPAN8P19075 237 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TNFSF10P50591 281 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 GPR143P51810 404 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 RAP1GDS1P52306 607 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 DNAJB13P59910 316 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 NAA20P61599 178 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TNFRSF17Q02223 184 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 LCP2Q13094 533 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 INPP5JQ15735 1006 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-213ENST00000598355 PRR30Q53SZ7 412 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-213ENST00000598355 LINC00696Q6ZRV3 163 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 NUDT13Q86X67 352 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 ZGRF1Q86YA3 2104 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 IQCKQ8N0W5 287 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 CPT1CQ8TCG5 803 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TRPC4APQ8TEL6 797 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 SLC29A3Q9BZD2 475 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 SLAMF7Q9NQ25 335 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 LYARQ9NX58 379 aaKnown RBP15.09■□□□□ 0.01
TRIM28-213ENST00000598355 LUZP4Q9P127 313 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 PHF11Q9UIL8 331 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 ASB4Q9Y574 426 aa15.09■□□□□ 0.01
TRIM28-213ENST00000598355 TTLL8A6PVC2 850 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 CDK2AP1O14519 115 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 HSD3B1P14060 373 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 HSD3B2P26439 372 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 PPP2R1BP30154 601 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ARL1P40616 181 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 CCT5P48643 541 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 PKNOX1P55347 436 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ACTN3Q08043 901 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 IFT88Q13099 833 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 SLC13A2Q13183 592 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 SLAMF1Q13291 335 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ZNF169Q14929 603 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 TLR1Q15399 786 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ELAVL1Q15717 326 aaKnown RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 FAM219BQ5XKK7 198 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 RPUSD3Q6P087 351 aaKnown RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 GPRIN3Q6ZVF9 776 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 CRLF3Q8IUI8 442 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 BANPQ8N9N5 519 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 B3GNT7Q8NFL0 401 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 AGAP11Q8TF27 550 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ANKRD9Q96BM1 317 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 APOPT1Q96IL0 206 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ILKAPQ9H0C8 392 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 KCNK13Q9HB14 408 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 FARSBQ9NSD9 589 aaKnown RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 VTI1BQ9UEU0 232 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 TEKT2Q9UIF3 430 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ZNF223Q9UK11 482 aaPredicted RBP15.08■□□□□ 0
TRIM28-213ENST00000598355 ADAM29Q9UKF5 820 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 SNX6Q9UNH7 406 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 PLAAQ9Y263 795 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 ATG4BQ9Y4P1 393 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 SPACA6W5XKT8 324 aa15.08■□□□□ 0
TRIM28-213ENST00000598355 CROCCQ5TZA2 2017 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 USP9XQ93008 2570 aaPredicted RBP15.07■□□□□ 0
TRIM28-213ENST00000598355 DYTNA2CJ06 578 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 OR5H15A6NDH6 313 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 COPEO14579 308 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 PROM1O43490 865 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 WDPCPO95876 746 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 PDYNP01213 254 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 TUBBP07437 444 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 MYL2P10916 166 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 CPN2P22792 545 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 TPP2P29144 1249 aaPredicted RBP15.07■□□□□ 0
TRIM28-213ENST00000598355 ZNF33BQ06732 778 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 GALNT1Q10472 559 aaPredicted RBP15.07■□□□□ 0
TRIM28-213ENST00000598355 TBL3Q12788 808 aaKnown RBP15.07■□□□□ 0
TRIM28-213ENST00000598355 SERTAD2Q14140 314 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 IGFBP7Q16270 282 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 INAQ16352 499 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 ACER2Q5QJU3 275 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 ABHD17BQ5VST6 288 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 FRMD7Q6ZUT3 714 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 GPR180Q86V85 440 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 C4orf33Q8N1A6 199 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 METTL4Q8N3J2 472 aa15.07■□□□□ 0
TRIM28-213ENST00000598355 KIF2BQ8N4N8 673 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms