RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 NAF1Q96HR8 494 aaKnown RBP18.81■□□□□ 0.6
TRIM47-204ENST00000587339 UGT2B28Q9BY64 529 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 TRIM4Q9C037 500 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 SLC35C2Q9NQQ7 365 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 ACSS1Q9NUB1 689 aaPredicted RBP18.81■□□□□ 0.6
TRIM47-204ENST00000587339 TMEM74BQ9NUR3 256 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 DCAF13Q9NV06 445 aaKnown RBP18.81■□□□□ 0.6
TRIM47-204ENST00000587339 ACSL6Q9UKU0 697 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 DTNAQ9Y4J8 743 aa18.81■□□□□ 0.6
TRIM47-204ENST00000587339 PROM1O43490 865 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 AIFM1O95831 613 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SMIM10L1P0DMW3 83 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 ACADSP16219 412 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 ATP6V1C1P21283 382 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 ZNF10P21506 573 aaPredicted RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 UQCRC2P22695 453 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 LAMA1P25391 3075 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 ARRB1P49407 418 aaPredicted RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 MVDP53602 400 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 BNIP3Q12983 259 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 HSPB3Q12988 150 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 MANEAQ5SRI9 462 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 C1orf210Q8IVY1 113 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 OR52N2Q8NGI0 321 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 GAB3Q8WWW8 586 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SMIM10Q96HG1 83 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 TRAPPC9Q96Q05 1148 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SERINC2Q96SA4 455 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 ELF4Q99607 663 aaPredicted RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CCDC3Q9BQI4 270 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 NLNQ9BYT8 704 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CHST8Q9H2A9 424 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CXorf36Q9H7Y0 433 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 FAM60AQ9NP50 221 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 AGPAT4Q9NRZ5 378 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 GPATCH2Q9NW75 528 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 RAPGEFL1Q9UHV5 662 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CSNK1G3Q9Y6M4 447 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 WASHC1A8K0Z3 465 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 RHPN2P1A8MT19 583 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 KRT75O95678 551 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CAPNS1P04632 268 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SNRPNP63162 240 aaKnown RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CHRNB3Q05901 458 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SFT2D3Q587I9 215 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 C6orf132Q5T0Z8 1188 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 C18orf63Q68DL7 685 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 PDSS2Q86YH6 399 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SLC25A45Q8N413 288 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 POP5Q969H6 163 aaKnown RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 MAPKAP1Q9BPZ7 522 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 CHID1Q9BWS9 393 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 C1GALT1Q9NS00 363 aa18.8■□□□□ 0.6
TRIM47-204ENST00000587339 FAF1Q9UNN5 650 aaPredicted RBP18.8■□□□□ 0.6
TRIM47-204ENST00000587339 SDK1Q7Z5N4 2213 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 RNF103-CHMP3A0A140T963 221 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 SLC9B1P1A6NJY1 282 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 PGRMC2O15173 223 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 ERAL1O75616 437 aaKnown RBP18.79■□□□□ 0.6
TRIM47-204ENST00000587339 SERPINA1P01009 418 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 NUDT7P0C024 238 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 RAP2AP10114 183 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 BMP2P12643 396 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 ALOX12P18054 663 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 VSX2P58304 361 aaPredicted RBP18.79■□□□□ 0.6
TRIM47-204ENST00000587339 FADDQ13158 208 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 VEZF1Q14119 521 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 C16orf72Q14CZ0 275 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 MLC1Q15049 377 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 COX20Q5RI15 118 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 SLC48A1Q6P1K1 146 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 ENPP6Q6UWR7 440 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 MAML2Q8IZL2 1156 aaPredicted RBP18.79■□□□□ 0.6
TRIM47-204ENST00000587339 CSNK1A1LQ8N752 337 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 FAM86B1Q8N7N1 296 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 ZNF570Q96NI8 536 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 MAP3K3Q99759 626 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 RAD21L1Q9H4I0 556 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 LRIT1Q9P2V4 623 aa18.79■□□□□ 0.6
TRIM47-204ENST00000587339 FAM149AA5PLN7 773 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 B3GALT2O43825 422 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 PRKD3O94806 890 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 ETFAP13804 333 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 IL1RNP18510 177 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 ALDH4A1P30038 563 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 NTSP30990 170 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 BUD31P41223 144 aaPredicted RBP18.78■□□□□ 0.6
TRIM47-204ENST00000587339 AQP4P55087 323 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 CASP9P55211 416 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 VAC14Q08AM6 782 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 TMEM214Q6NUQ4 689 aaKnown RBP18.78■□□□□ 0.6
TRIM47-204ENST00000587339 FAM92BQ6ZTR7 304 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 RNF130Q86XS8 419 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 ICA1LQ8NDH6 482 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 BBS4Q96RK4 519 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 VCXQ9H320 206 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 SUSD2Q9UGT4 822 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 MAP4K5Q9Y4K4 846 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 MT-ND1P03886 318 aa18.78■□□□□ 0.6
TRIM47-204ENST00000587339 RPSAP08865 295 aaKnown RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms