RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CYP27C1Q4G0S4 372 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 FAM180BQ6P0A1 224 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 AHSA2Q719I0 299 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ZNF605Q86T29 641 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 P2RY8Q86VZ1 359 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 NATD1Q8N6N6 113 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SMYD1Q8NB12 490 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 RHOXF1Q8NHV9 184 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 OR5P2Q8WZ92 322 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SMPDL3AQ92484 453 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PDXPQ96GD0 296 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PIP5K1AQ99755 562 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 NIPSNAP1Q9BPW8 284 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SLAMF7Q9NQ25 335 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 PLCXD1Q9NUJ7 323 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 ACER3Q9NUN7 267 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 SNX8Q9Y5X2 465 aa9.61□□□□□ -0.87
VPS53-220ENST00000576149 CHD7Q9P2D1 2997 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 FEZF1A0PJY2 475 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 OR2A25A4D2G3 310 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 J3KTA2 159 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 CAPN5O15484 640 aaPredicted RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 TFPTP0C1Z6 253 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 ZNF12P17014 697 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 SERPINB1P30740 379 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 CYP4F2P78329 520 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 REEP5Q00765 189 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 GPM6BQ13491 265 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 HEPACAMQ14CZ8 416 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 SAXO2Q658L1 398 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 PAGE2Q7Z2X7 111 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 P3H2Q8IVL5 708 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 NEURL3Q96EH8 262 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 PSD2Q9BQI7 771 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 TEX101Q9BY14 249 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 NT5DC2Q9H857 520 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 TRPV4Q9HBA0 871 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 GDE1Q9NZC3 331 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 SPATA7Q9P0W8 599 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 PSORS1C1Q9UIG5 152 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 RAB23Q9ULC3 237 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 SH3GLB1Q9Y371 365 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 ENPP4Q9Y6X5 453 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 TRBC2A0A5B9 178 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 H7BY64 318 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 J3QRK9 145 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 KMOO15229 486 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 RHCEP18577 417 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 PSMB5P28074 263 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 GJA4P35212 333 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 OPRL1P41146 370 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 GSSP48637 474 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 MANFP55145 182 aaKnown RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 RAB15P59190 212 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 RUNX3Q13761 415 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 DGCR6Q14129 220 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 AGBL4Q5VU57 503 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 UBE2UQ5VVX9 321 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 TANGO2Q6ICL3 276 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 REEP3Q6NUK4 255 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 VITQ6UXI7 678 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 CEACAM20Q6UY09 585 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 LINC00299Q6ZSB3 139 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 ZNF784Q8NCA9 323 aaPredicted RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 ABTB1Q969K4 478 aaPredicted RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 SH3YL1Q96HL8 342 aaPredicted RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 PRAP1Q96NZ9 151 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 NELL2Q99435 816 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 COPS4Q9BT78 406 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 PITHD1Q9GZP4 211 aaPredicted RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 ABCG4Q9H172 646 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 LHX9Q9NQ69 397 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 MBNL1Q9NR56 388 aaKnown RBP9.6□□□□□ -0.87
VPS53-220ENST00000576149 FAIMQ9NVQ4 179 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 TBCCD1Q9NVR7 557 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 DCAF16Q9NXF7 216 aa9.6□□□□□ -0.87
VPS53-220ENST00000576149 COL4A3Q01955 1670 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 PCDH17O14917 1159 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 MID1O15344 667 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 PDPK1O15530 556 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 PCDH8O95206 1070 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 KAT7O95251 611 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 LCKP06239 509 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 SLC35G4P0C7Q5 338 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 FRKP42685 505 aaPredicted RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 RANBP1P43487 201 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 CLCNKAP51800 687 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 PCBP4P57723 403 aaKnown RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 TEKQ02763 1124 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 OCA2Q04671 838 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 AGERQ15109 404 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 DUSP7Q16829 419 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 DUS1LQ6P1R4 473 aaKnown RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 CCBE1Q6UXH8 406 aaPredicted RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.59□□□□□ -0.87
VPS53-220ENST00000576149 CCDC103Q8IW40 242 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 DNAJC22Q8N4W6 341 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 HORMAD2Q8N7B1 307 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 OR9Q2Q8NGE9 314 aa9.59□□□□□ -0.87
VPS53-220ENST00000576149 NDNFQ8TB73 568 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms