RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	TUBB6	Q9BUF5	446 aa		13.63	□□□□□ -0.23
COMMD4-225	ENST00000569245	PNPO	Q9NVS9	261 aa		13.63	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF225	Q9UK10	706 aa		13.63	□□□□□ -0.23
COMMD4-225	ENST00000569245	UBR5	O95071	2799 aa	Predicted RBP	13.63	□□□□□ -0.23
COMMD4-225	ENST00000569245	MDC1	Q14676	2089 aa	Known RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245		A0A1B0GTL3	188 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245		A0A1W2PQ72	361 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	SLCO1B7	G3V0H7	640 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	AZIN1	O14977	448 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	UGDH	O60701	494 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	DNAJB6	O75190	326 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	ENO1	P06733	434 aa	Known RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CELA2A	P08217	269 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CYC1	P08574	325 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	JAK1	P23458	1154 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CASP2	P42575	452 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CCNG1	P51959	295 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	EFNA3	P52797	238 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	HYAL2	Q12891	473 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CHIT1	Q13231	466 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	LAPTM5	Q13571	262 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	PCOLCE	Q15113	449 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	TBCC	Q15814	346 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	GGTA1P	Q4G0N0	100 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	PRR30	Q53SZ7	412 aa	Predicted RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	CRB2	Q5IJ48	1285 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	SH2D4B	Q5SQS7	431 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	MILR1	Q7Z6M3	343 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	ANKRD37	Q7Z713	158 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	WDR75	Q8IWA0	830 aa	Known RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	L3MBTL4	Q8NA19	623 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	WDR34	Q96EX3	536 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	LMF1	Q96S06	567 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	WDR77	Q9BQA1	342 aa	Predicted RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	EFCAB11	Q9BUY7	163 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	SHCBP1L	Q9BZQ2	653 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	PITHD1	Q9GZP4	211 aa	Predicted RBP	13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	EHD1	Q9H4M9	534 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	NT5DC2	Q9H857	520 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	TNFRSF12A	Q9NP84	129 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	VTI1B	Q9UEU0	232 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	TRPS1	Q9UHF7	1281 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245	TRAF6	Q9Y4K3	522 aa		13.62	□□□□□ -0.23
COMMD4-225	ENST00000569245		A0A0G2JN53	185 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	DYTN	A2CJ06	578 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	LRIT2	A6NDA9	550 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245		A8MUI8	341 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	ERI3	O43414	337 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	CLDN9	O95484	217 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	TROVE2	P10155	538 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	RNH1	P13489	461 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	ALOX15	P16050	662 aa	Predicted RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	GSTM2	P28161	218 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	ARG2	P78540	354 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	MFAP5	Q13361	173 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	BTBD16	Q32M84	506 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	SFT2D3	Q587I9	215 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	LIPJ	Q5W064	366 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	KANK2	Q63ZY3	851 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	RIPOR1	Q6ZS17	1223 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245		Q6ZS92	163 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	PIGW	Q7Z7B1	504 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	CISD2	Q8N5K1	135 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	OR4F6	Q8NGB9	312 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	GAL3ST3	Q96A11	431 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	SEC16B	Q96JE7	1060 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	REXO4	Q9GZR2	422 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	CLK4	Q9HAZ1	481 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	LANCL2	Q9NS86	450 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	KLHL14	Q9P2G3	628 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245	CSAG2	Q9Y5P2	127 aa		13.61	□□□□□ -0.23
COMMD4-225	ENST00000569245		A0A088AWK7	358 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	MAGEB17	A8MXT2	336 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF195	O14628	629 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	HDAC3	O15379	428 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	SNX3	O60493	162 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PRMT3	O60678	531 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PRAMEF4	O60810	478 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	CLEC3A	O75596	197 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	OR4F21	O95013	312 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	SMIM10L1	P0DMW3	83 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	KIT	P10721	976 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	UROS	P10746	265 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ITGAM	P11215	1152 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PCNA	P12004	261 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	ZNF10	P21506	573 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	HNRNPH1	P31943	449 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PLA2G16	P53816	162 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	OR4D2	P58180	307 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	RHAG	Q02094	409 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TGM3	Q08188	693 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TLR1	Q15399	786 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	UGT3A2	Q3SY77	523 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PRAMEF9	Q5VWM5	478 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	LETMD1	Q6P1Q0	360 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	TRIM40	Q6P9F5	258 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	IGFL2	Q6UWQ7	119 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	RNF165	Q6ZSG1	346 aa		13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	MYLK4	Q86YV6	388 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-225	ENST00000569245	PLPP5	Q8NEB5	264 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms