RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SLC12A4Q9UP95 1085 aa12.2□□□□□ -0.46
CLK3-224ENST00000568605 IGKV3D-11A0A0A0MRZ8 115 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 IGHV3-20A0A0C4DH32 117 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SAGE2PA6NJ88 616 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SLC28A2O43868 658 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 TRIM13O60858 407 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 GUCY1B2O75343 617 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 ULK1O75385 1050 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SPAG7O75391 227 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 PDYNP01213 254 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 NR2F6P10588 404 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 NEK2P51955 445 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 EFNA3P52797 238 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 NAGLUP54802 743 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 BTG2P78543 158 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 STX4Q12846 297 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SLAMF1Q13291 335 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SERTAD2Q14140 314 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 SGO1Q5FBB7 561 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 IGFL3Q6UXB1 125 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 UBE3DQ7Z6J8 389 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 GPR180Q86V85 440 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 GBP7Q8N8V2 638 aaPredicted RBP12.19□□□□□ -0.46
CLK3-224ENST00000568605 M1APQ8TC57 530 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 BRIX1Q8TDN6 353 aaKnown RBP12.19□□□□□ -0.46
CLK3-224ENST00000568605 IMMP1LQ96LU5 166 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 CSF3RQ99062 836 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 MAPKAP1Q9BPZ7 522 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 MESP1Q9BRJ9 268 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 DDX31Q9H8H2 851 aaKnown RBP12.19□□□□□ -0.46
CLK3-224ENST00000568605 SSU72Q9NP77 194 aaKnown RBP12.19□□□□□ -0.46
CLK3-224ENST00000568605 ADAP2Q9NPF8 381 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 ABI3Q9P2A4 366 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 FBXW2Q9UKT8 454 aa12.19□□□□□ -0.46
CLK3-224ENST00000568605 A0A0A6YYD5 115 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 DYTNA2CJ06 578 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 OR2W5A6NFC9 320 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 FAM227AF5H4B4 570 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 MASP2O00187 686 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 MANBAO00462 879 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 CYR61O00622 381 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 PPP6CO00743 305 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 DYRK3O43781 588 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 CTNSO60931 367 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 DNAJB6O75190 326 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ETHE1O95571 254 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 PDGFAP04085 211 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 COX7A2P14406 83 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 BSGP35613 385 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 CASRP41180 1078 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 SLC26A5P58743 744 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 Q0VFX4 171 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 BIKQ13323 160 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 MFAP5Q13361 173 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ELAVL1Q15717 326 aaKnown RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 SPIN4Q56A73 249 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ABHD17BQ5VST6 288 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 OR52E8Q6IFG1 317 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 C10orf107Q8IVU9 208 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 IQCKQ8N0W5 287 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 SLC5A8Q8N695 610 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 TCP10LQ8TDR4 215 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 PNPLA2Q96AD5 504 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 PGM2Q96G03 612 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 WDR77Q9BQA1 342 aaPredicted RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 PELOQ9BRX2 385 aaKnown RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 SORBS1Q9BX66 1292 aaKnown RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 ZNF717Q9BY31 904 aaPredicted RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 RPF2Q9H7B2 306 aaKnown RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 KCNK13Q9HB14 408 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 MMP25Q9NPA2 562 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 NECTIN3Q9NQS3 549 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ARGLU1Q9NWB6 273 aaPredicted RBP12.18□□□□□ -0.46
CLK3-224ENST00000568605 PTGFRNQ9P2B2 879 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 VPS29Q9UBQ0 182 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ACTL7BQ9Y614 415 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 ZNF462Q96JM2 2506 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 SHANK1Q9Y566 2161 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 EML6Q6ZMW3 1958 aa12.18□□□□□ -0.46
CLK3-224ENST00000568605 SMG1Q96Q15 3661 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 A0A1B0GTL3 188 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 K7EM74 188 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 TM9SF1O15321 606 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 CTIFO43310 598 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 SUV39H1O43463 412 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 MYO1DO94832 1006 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 CHEK2O96017 543 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 IFNA16P05015 189 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 FAM58BPP0C7Q3 252 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 ITGAMP11215 1152 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 SERPINB5P36952 375 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 HNRNPH2P55795 449 aaKnown RBP12.17□□□□□ -0.46
CLK3-224ENST00000568605 PLIN5Q00G26 463 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 IMPG1Q17R60 797 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 CCNYL2Q5T2Q4 361 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 CLNKQ7Z7G1 428 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 SHISA5Q8N114 240 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 METTL4Q8N3J2 472 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 TMEM132CQ8N3T6 1108 aa12.17□□□□□ -0.46
CLK3-224ENST00000568605 SIRT6Q8N6T7 355 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms