RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CTIFO43310 598 aaKnown RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 ERN1O75460 977 aaKnown RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 SOX30O94993 753 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 MPC1LP0DKB6 136 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 TMIGD3P0DMS9 266 aaPredicted RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 SMIM10L1P0DMW3 83 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 RNF4P78317 190 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 RGS1Q08116 209 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SLC13A2Q13183 592 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 RUNX2Q13950 521 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SLC22A10Q63ZE4 541 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 C11orf63Q6NUN7 778 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 NIPAL1Q6NVV3 410 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 AGTRAPQ6RW13 159 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 OPN5Q6U736 354 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 PLXDC2Q6UX71 529 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 LUZP1Q86V48 1076 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.78□□□□□ -0.68
CLK3-222ENST00000568232 TC2NQ8N9U0 490 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 OR4K1Q8NGD4 311 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 MBD3L2Q8NHZ7 208 aaPredicted RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 PTPMT1Q8WUK0 201 aaPredicted RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 ALG3Q92685 438 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 MFSD3Q96ES6 412 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SMIM10Q96HG1 83 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 WFIKKN1Q96NZ8 548 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 GBP4Q96PP9 640 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 OR8D2Q9GZM6 311 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 PRDM14Q9GZV8 571 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 AICDAQ9GZX7 198 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SH2D2AQ9NP31 389 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 ZNHIT6Q9NWK9 470 aaKnown RBP10.78□□□□□ -0.68
CLK3-222ENST00000568232 KLHL28Q9NXS3 571 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 NDRG3Q9UGV2 375 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 ADAMTS6Q9UKP5 1117 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 MED16Q9Y2X0 877 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 SLC6A5Q9Y345 797 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 CLCA3PQ9Y6N3 262 aa10.78□□□□□ -0.68
CLK3-222ENST00000568232 A0A0G2JN53 185 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 TRBC2A0A5B9 178 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CD8B2A6NJW9 211 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 NRDCO43847 1150 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ZNF189O75820 626 aaPredicted RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 IL18BPO95998 194 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 IFNA16P05015 189 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ETS1P14921 441 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 GDF1P27539 372 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 SOX18P35713 384 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 SLCO1A2P46721 670 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CCR8P51685 355 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 BTN3A2P78410 334 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CCZ1BP86790 482 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CCZ1P86791 482 aaPredicted RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 SRSF2Q01130 221 aaKnown RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 ASPHQ12797 758 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ZNF791Q3KP31 576 aaPredicted RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 DCST1Q5T197 706 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 MRNIPQ6NTE8 343 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 LCTLQ6UWM7 567 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CENPUQ71F23 418 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 TMEM132CQ8N3T6 1108 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 MEIOBQ8N635 442 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ANKRD53Q8N9V6 530 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 FAM47BQ8NA70 645 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ABHD11Q8NFV4 315 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 SLC35B2Q8TB61 432 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 SLC44A1Q8WWI5 657 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 PYCR2Q96C36 320 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 SGPP1Q9BX95 441 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 CLK4Q9HAZ1 481 aaKnown RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 ADAP2Q9NPF8 381 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ABHD10Q9NUJ1 306 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 ZFP69BQ9UJL9 534 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 BOKQ9UMX3 212 aaPredicted RBP10.77□□□□□ -0.69
CLK3-222ENST00000568232 PDE10AQ9Y233 779 aa10.77□□□□□ -0.69
CLK3-222ENST00000568232 TCRBV7S2A1N4TA0A589 114 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 GOLGA6L22H0YM25 854 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 TRAPPC6AO75865 159 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 ACSL3O95573 720 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 TP53P04637 393 aaPredicted RBP10.76□□□□□ -0.69
CLK3-222ENST00000568232 APRTP07741 180 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 MAGEA1P43355 309 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 SCTRP47872 440 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 HSD17B7P56937 341 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 RWDD2BP57060 319 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 RUNX1T1Q06455 604 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 FAM27E3Q08E93 113 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 ELAVL1Q15717 326 aaKnown RBP10.76□□□□□ -0.69
CLK3-222ENST00000568232 PHKG1Q16816 387 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 TTLL9Q3SXZ7 439 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 CHRFAM7AQ494W8 412 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 PIGGQ5H8A4 983 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 TOR1AIP1Q5JTV8 583 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 VASNQ6EMK4 673 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 ZNF549Q6P9A3 640 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 C20orf204Q6ZNR8 217 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 SYDE1Q6ZW31 735 aaPredicted RBP10.76□□□□□ -0.69
CLK3-222ENST00000568232 CPNE9Q8IYJ1 553 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 PM20D2Q8IYS1 436 aa10.76□□□□□ -0.69
CLK3-222ENST00000568232 PAQR8Q8TEZ7 354 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms