RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 KCNE2Q9Y6J6 123 aa12.61□□□□□ -0.39
CLN3-210ENST00000563874 ZNF106Q9H2Y7 1883 aaKnown RBP12.61□□□□□ -0.39
CLN3-210ENST00000563874 A0A1W2PQ09 198 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 TLR4O00206 839 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 RGS13O14921 159 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 HOXC11O43248 304 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 CSO75390 466 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 CATP04040 527 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 IFNW1P05000 195 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 PTX3P26022 381 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 LIMS1P48059 325 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 EEF1A2Q05639 463 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 FCHO2Q0JRZ9 810 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SEC23BQ15437 767 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 TBRG1Q3YBR2 411 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SLCO4C1Q6ZQN7 724 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 TMCO2Q7Z6W1 182 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 ZNF740Q8NDX6 193 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 FAM46DQ8NEK8 389 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 LILRB4Q8NHJ6 448 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 TMCO6Q96DC7 493 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 ST6GAL2Q96JF0 529 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 MAPKAP1Q9BPZ7 522 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SPNS1Q9H2V7 528 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 GOLGA4Q13439 2230 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 CAPN5O15484 640 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 LRRTM2O43300 516 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 LATS1O95835 1130 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 CYP17A1P05093 508 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SCG5P05408 212 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 FURINP09958 794 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 HSD3B1P14060 373 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 HSD3B2P26439 372 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 ATN1P54259 1190 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 SPHARQ15513 63 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 MPPE1Q53F39 396 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 UBE2Q1Q7Z7E8 422 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 RBM45Q8IUH3 476 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 OXR1Q8N573 874 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 C2orf73Q8N5S3 287 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 RASGEF1AQ8N9B8 481 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 PHOX2BQ99453 314 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 OR2B2Q9GZK3 357 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 POLR2J2Q9GZM3 115 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 MTG2Q9H4K7 406 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 IL21Q9HBE4 155 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 CNOT2Q9NZN8 540 aaKnown RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 KLHL20Q9Y2M5 609 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SH3D21A4FU49 640 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 OR10H3O60404 316 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 APOL3O95236 402 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 CSF2P04141 144 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 HBQ1P09105 142 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 IL7P13232 177 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 EPHB3P54753 998 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 TBPL1P62380 186 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 KCNC3Q14003 757 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 ASTLQ6HA08 431 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 GAREM2Q75VX8 874 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 RAB43Q86YS6 212 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 IQCF1Q8N6M8 205 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 FLCNQ8NFG4 579 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 C16orf78Q8WTQ4 265 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 ZNF480Q8WV37 535 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 CCDC177Q9NQR7 707 aaPredicted RBP12.6□□□□□ -0.39
CLN3-210ENST00000563874 TBC1D14Q9P2M4 693 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 ATP6V1HQ9UI12 483 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 SNX11Q9Y5W9 270 aa12.6□□□□□ -0.39
CLN3-210ENST00000563874 PCM1Q15154 2024 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 A0A075B6Q4 140 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 A0A1W2PRB8 838 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CENPXA8MT69 81 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 PLD2O14939 933 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 NPC1O15118 1278 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 TPST2O60704 377 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 GPR37L1O60883 481 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 SEMA7AO75326 666 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 URODP06132 367 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 BCHEP06276 602 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CLEC2LP0C7M8 214 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 RHCEP18577 417 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 ENPP1P22413 925 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CXCR2P25025 360 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 PSMA1P25786 263 aaKnown RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 SSTR4P31391 388 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CRYBB2P43320 205 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 RBBP4Q09028 425 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 CRB2Q5IJ48 1285 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 LAS2Q8IYD9 372 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLN3-210ENST00000563874 RAB8BQ92930 207 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 DEPDC7Q96QD5 511 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 WFDC6Q9BQY6 131 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 RSPO3Q9BXY4 272 aaPredicted RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 TMEM38AQ9H6F2 299 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 RC3H2Q9HBD1 1191 aaKnown RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 PAQR5Q9NXK6 330 aaPredicted RBP12.59□□□□□ -0.39
CLN3-210ENST00000563874 PPIL1Q9Y3C6 166 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 INSL5Q9Y5Q6 135 aa12.59□□□□□ -0.39
CLN3-210ENST00000563874 MEIOCA2RUB1 952 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms