RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GSC2O15499 205 aa8.8□□□□□ -1
VPS39-205ENST00000562258 CHST10O43529 356 aa8.8□□□□□ -1
VPS39-205ENST00000562258 FKBP6O75344 327 aa8.8□□□□□ -1
VPS39-205ENST00000562258 OR12D1P0DN82 309 aa8.8□□□□□ -1
VPS39-205ENST00000562258 PORP16435 677 aaPredicted RBP8.8□□□□□ -1
VPS39-205ENST00000562258 MATN1P21941 496 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NR0B1P51843 470 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 CDK6Q00534 326 aa8.8□□□□□ -1
VPS39-205ENST00000562258 FGL2Q14314 439 aa8.8□□□□□ -1
VPS39-205ENST00000562258 EPGNQ6UW88 154 aa8.8□□□□□ -1
VPS39-205ENST00000562258 SBSNQ6UWP8 590 aa8.8□□□□□ -1
VPS39-205ENST00000562258 TMEM207Q6UWW9 146 aa8.8□□□□□ -1
VPS39-205ENST00000562258 RINLQ6ZS11 566 aa8.8□□□□□ -1
VPS39-205ENST00000562258 CNTN4Q8IWV2 1026 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ARL10Q8N8L6 244 aa8.8□□□□□ -1
VPS39-205ENST00000562258 C19orf47Q8N9M1 422 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 C10orf82Q8WW14 230 aa8.8□□□□□ -1
VPS39-205ENST00000562258 LRRC58Q96CX6 371 aa8.8□□□□□ -1
VPS39-205ENST00000562258 TMEM79Q9BSE2 394 aa8.8□□□□□ -1
VPS39-205ENST00000562258 LIN28AQ9H9Z2 209 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 KLHL1Q9NR64 748 aa8.8□□□□□ -1
VPS39-205ENST00000562258 TMED5Q9Y3A6 229 aa8.8□□□□□ -1
VPS39-205ENST00000562258 DIDO1Q9BTC0 2240 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 C1orf226A1L170 272 aa8.8□□□□□ -1
VPS39-205ENST00000562258 PIAS2O75928 621 aa8.8□□□□□ -1
VPS39-205ENST00000562258 SERPINA1P01009 418 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ALPPP05187 535 aa8.8□□□□□ -1
VPS39-205ENST00000562258 FOLR3P41439 243 aa8.8□□□□□ -1
VPS39-205ENST00000562258 KHKP50053 298 aa8.8□□□□□ -1
VPS39-205ENST00000562258 KIAA1024LP59773 190 aa8.8□□□□□ -1
VPS39-205ENST00000562258 SCARB2Q14108 478 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ARHGAP19Q14CB8 494 aa8.8□□□□□ -1
VPS39-205ENST00000562258 PRAMEF17Q5VTA0 474 aa8.8□□□□□ -1
VPS39-205ENST00000562258 GUSBP11Q6P575 273 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NUP43Q8NFH3 380 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NFKBIDQ8NI38 313 aa8.8□□□□□ -1
VPS39-205ENST00000562258 FAM174AQ8TBP5 190 aa8.8□□□□□ -1
VPS39-205ENST00000562258 GABRG3Q99928 467 aa8.8□□□□□ -1
VPS39-205ENST00000562258 GSTO2Q9H4Y5 243 aa8.8□□□□□ -1
VPS39-205ENST00000562258 KIR3DX1Q9H7L2 352 aa8.8□□□□□ -1
VPS39-205ENST00000562258 BLOC1S6Q9UL45 172 aa8.8□□□□□ -1
VPS39-205ENST00000562258 CXCR6O00574 342 aa8.8□□□□□ -1
VPS39-205ENST00000562258 HAT1O14929 419 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ITGA2P17301 1181 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ACADLP28330 430 aa8.8□□□□□ -1
VPS39-205ENST00000562258 MAGEA3P43357 314 aa8.8□□□□□ -1
VPS39-205ENST00000562258 INHBCP55103 352 aa8.8□□□□□ -1
VPS39-205ENST00000562258 PLCXD2Q0VAA5 305 aa8.8□□□□□ -1
VPS39-205ENST00000562258 TAF13Q15543 124 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ZNF311Q5JNZ3 666 aa8.8□□□□□ -1
VPS39-205ENST00000562258 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.8□□□□□ -1
VPS39-205ENST00000562258 OR5M10Q6IEU7 315 aa8.8□□□□□ -1
VPS39-205ENST00000562258 LCTLQ6UWM7 567 aa8.8□□□□□ -1
VPS39-205ENST00000562258 LRRC25Q8N386 305 aaPredicted RBP8.8□□□□□ -1
VPS39-205ENST00000562258 OR2L5Q8NG80 312 aa8.8□□□□□ -1
VPS39-205ENST00000562258 KLHL6Q8WZ60 621 aa8.8□□□□□ -1
VPS39-205ENST00000562258 GTPBP3Q969Y2 492 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 VWCEQ96DN2 955 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ART5Q96L15 291 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NUDT22Q9BRQ3 303 aa8.8□□□□□ -1
VPS39-205ENST00000562258 LYARQ9NX58 379 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 SRPK3Q9UPE1 567 aa8.8□□□□□ -1
VPS39-205ENST00000562258 MYO18BQ8IUG5 2567 aa8.8□□□□□ -1
VPS39-205ENST00000562258 FAM208BQ5VWN6 2430 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NME6O75414 186 aaPredicted RBP8.8□□□□□ -1
VPS39-205ENST00000562258 ADARP55265 1226 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 C1DQ13901 141 aaKnown RBP8.8□□□□□ -1
VPS39-205ENST00000562258 TMEM35AQ53FP2 167 aa8.8□□□□□ -1
VPS39-205ENST00000562258 MTX3Q5HYI7 312 aa8.8□□□□□ -1
VPS39-205ENST00000562258 OR52E8Q6IFG1 317 aa8.8□□□□□ -1
VPS39-205ENST00000562258 SLC47A1Q96FL8 570 aa8.8□□□□□ -1
VPS39-205ENST00000562258 UBXN10Q96LJ8 280 aa8.8□□□□□ -1
VPS39-205ENST00000562258 SLC35C2Q9NQQ7 365 aa8.8□□□□□ -1
VPS39-205ENST00000562258 C1GALT1Q9NS00 363 aa8.8□□□□□ -1
VPS39-205ENST00000562258 EURLQ9NYK6 297 aa8.8□□□□□ -1
VPS39-205ENST00000562258 USE1Q9NZ43 259 aa8.8□□□□□ -1
VPS39-205ENST00000562258 NLGN3Q9NZ94 848 aa8.8□□□□□ -1
VPS39-205ENST00000562258 ERVK-19Q9WJR5 959 aa8.8□□□□□ -1
VPS39-205ENST00000562258 TCF20Q9UGU0 1960 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 RLFQ13129 1914 aa8.79□□□□□ -1
VPS39-205ENST00000562258 OR5K3A6NET4 321 aa8.79□□□□□ -1
VPS39-205ENST00000562258 C17orf105B2RV13 164 aa8.79□□□□□ -1
VPS39-205ENST00000562258 ZNF749O43361 778 aa8.79□□□□□ -1
VPS39-205ENST00000562258 COQ9O75208 318 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SLCO2B1O94956 709 aa8.79□□□□□ -1
VPS39-205ENST00000562258 NELFEP18615 380 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 SERPINB1P30740 379 aa8.79□□□□□ -1
VPS39-205ENST00000562258 VHLP40337 213 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TAS2R38P59533 333 aa8.79□□□□□ -1
VPS39-205ENST00000562258 YBX1P67809 324 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 EEF1A2Q05639 463 aaKnown RBP8.79□□□□□ -1
VPS39-205ENST00000562258 GRHL2Q6ISB3 625 aa8.79□□□□□ -1
VPS39-205ENST00000562258 LINC00696Q6ZRV3 163 aa8.79□□□□□ -1
VPS39-205ENST00000562258 TRIM69Q86WT6 500 aa8.79□□□□□ -1
VPS39-205ENST00000562258 SFTPA2Q8IWL1 248 aa8.79□□□□□ -1
VPS39-205ENST00000562258 OR2L8Q8NGY9 312 aa8.79□□□□□ -1
VPS39-205ENST00000562258 MIPOL1Q8TD10 442 aa8.79□□□□□ -1
VPS39-205ENST00000562258 DPH2Q9BQC3 489 aaPredicted RBP8.79□□□□□ -1
VPS39-205ENST00000562258 TXLNGYQ9BZA5 131 aa8.79□□□□□ -1
VPS39-205ENST00000562258 IRF2BPLQ9H1B7 796 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms