RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SARGQ9BW04 601 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ACPTQ9BZG2 426 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 REXO4Q9GZR2 422 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 CHST8Q9H2A9 424 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 COPS7BQ9H9Q2 264 aaPredicted RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 PLCL2Q9UPR0 1127 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 SH2B3Q9UQQ2 575 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 WBP11Q9Y2W2 641 aaKnown RBP11.17□□□□□ -0.62
LDLR-212ENST00000560467 HIVEP3Q5T1R4 2406 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 ABCA12Q86UK0 2595 aa11.17□□□□□ -0.62
LDLR-212ENST00000560467 A0A0J9YVX5 310 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 PRAMEF4O60810 478 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SCRG1O75711 98 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SLC22A3O75751 556 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 JUNP05412 331 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 ESRRAP11474 423 aaPredicted RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 RPL3P39023 403 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 BCL6P41182 706 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 GSTM5P46439 218 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 ASMTP46597 345 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 HTR6P50406 440 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 STX5Q13190 355 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 ESPL1Q14674 2120 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 TCTE1Q5JU00 501 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 IL23RQ5VWK5 629 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 PRAMEF9Q5VWM5 478 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SLC6A19Q695T7 634 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 NOXRED1Q6NXP6 359 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 JMJD6Q6NYC1 403 aaPredicted RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 CYP20A1Q6UW02 462 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 Q6ZSR9 355 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 CLNKQ7Z7G1 428 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 TMEM126BQ8IUX1 230 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 MCATQ8IVS2 390 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 FAM20CQ8IXL6 584 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 GPR135Q8IZ08 494 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 D2HGDHQ8N465 521 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 CPSF7Q8N684 471 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 ENDOVQ8N8Q3 282 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 C19orf47Q8N9M1 422 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 ZNF740Q8NDX6 193 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 ADAMTS17Q8TE56 1095 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 KCNC2Q96PR1 638 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 TRAPPC9Q96Q05 1148 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 NUDT9Q9BW91 350 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 DPY30Q9C005 99 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 NMUR2Q9GZQ4 415 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 KLHL25Q9H0H3 589 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 OR51B5Q9H339 312 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SAR1AQ9NR31 198 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 TXLNGQ9NUQ3 528 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.16□□□□□ -0.621e-6■■□□□ 13.9
LDLR-212ENST00000560467 MAP10Q9P2G4 905 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SERTAD3Q9UJW9 196 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 FARSAQ9Y285 508 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 KLHL20Q9Y2M5 609 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 ZNF451Q9Y4E5 1061 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 PTGDR2Q9Y5Y4 395 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 SPACA6W5XKT8 324 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 TEP1Q99973 2627 aaKnown RBP11.16□□□□□ -0.62
LDLR-212ENST00000560467 SHANK1Q9Y566 2161 aa11.16□□□□□ -0.62
LDLR-212ENST00000560467 PRRC2CQ9Y520 2896 aaKnown RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 IGKV1-8A0A0C4DH67 115 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 DYTNA2CJ06 578 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 LRIT2A6NDA9 550 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 A6NL46 340 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 NPIPB8E9PQR5 432 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 CEACAM4O75871 244 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 CLDN1O95832 211 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ANXA4P09525 319 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 PRPS1L1P21108 318 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 DCTP40126 519 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 TSFMP43897 325 aaKnown RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 CLNS1AP54105 237 aaKnown RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 ITGA1P56199 1179 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 KCNK10P57789 538 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 YBX1P67809 324 aaKnown RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 MXRA7P84157 204 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 RAPSNQ13702 412 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 KRT72Q14CN4 511 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 MMEL1Q495T6 779 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 RFTN2Q52LD8 501 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 TOR1AIP1Q5JTV8 583 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 CCNYL2Q5T2Q4 361 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 FCRL6Q6DN72 434 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 FBXO42Q6P3S6 717 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ZNF517Q6ZMY9 492 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 NUDT13Q86X67 352 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 PLD3Q8IV08 490 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 CSNK1A1LQ8N752 337 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 RBMXL3Q8N7X1 1067 aaKnown RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 GLB1L3Q8NCI6 653 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 FDCSPQ8NFU4 85 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 FLVCR1-AS1Q8TAF5 88 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 PRR7Q8TB68 274 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 ZNF501Q96CX3 271 aaPredicted RBP11.15□□□□□ -0.62
LDLR-212ENST00000560467 NSL1Q96IY1 281 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 TBCDQ9BTW9 1192 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 C1orf50Q9BV19 199 aa11.15□□□□□ -0.62
LDLR-212ENST00000560467 CHRNA10Q9GZZ6 450 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms