RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 FCRL1Q96LA6 429 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 C3orf30Q96M34 536 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 SLCO1B3Q9NPD5 702 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 C1orf109Q9NX04 203 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 MRPS33Q9Y291 106 aaKnown RBP20.41■□□□□ 0.86
SNX1-206ENST00000559389 ATG4BQ9Y4P1 393 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 HS3ST3B1Q9Y662 390 aa20.41■□□□□ 0.86
SNX1-206ENST00000559389 URB1O60287 2271 aaKnown RBP20.41■□□□□ 0.86
SNX1-206ENST00000559389 CDC14CA4D256 554 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 HEXBP07686 556 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 KIAA0040Q15053 153 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 SCUBE1Q8IWY4 988 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 ZNF595Q8IYB9 648 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 FAM76AQ8TAV0 307 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 NACC2Q96BF6 587 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 EBPLQ9BY08 206 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 PFDN4Q9NQP4 134 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 RIC8BQ9NVN3 520 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 TEX10Q9NXF1 929 aaPredicted RBP20.4■□□□□ 0.86
SNX1-206ENST00000559389 CCDC88CQ9P219 2028 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 MARCOQ9UEW3 520 aaPredicted RBP20.4■□□□□ 0.86
SNX1-206ENST00000559389 MMACHCQ9Y4U1 282 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 ASPMQ8IZT6 3477 aa20.4■□□□□ 0.86
SNX1-206ENST00000559389 IGKV3D-11A0A0A0MRZ8 115 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 ATP6AP2A0A1C7CYW4 349 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 A0A1W2PR48 441 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 BLACEA4D250 179 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 OR2W5A6NFC9 320 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 PCDH17O14917 1159 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 PROM1O43490 865 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 ALOX12BO75342 701 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 ATP6AP2O75787 350 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 AIFM1O95831 613 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 NR2F6P10588 404 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 BUD31P41223 144 aaPredicted RBP20.39■□□□□ 0.85
SNX1-206ENST00000559389 TRA2BP62995 288 aaKnown RBP20.39■□□□□ 0.85
SNX1-206ENST00000559389 RPL38P63173 70 aaKnown RBP20.39■□□□□ 0.85
SNX1-206ENST00000559389 C18orf63Q68DL7 685 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 CRLF3Q8IUI8 442 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 TSLPQ969D9 159 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 PPP3R2Q96LZ3 170 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 PRDM9Q9NQV7 894 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 PRTFDC1Q9NRG1 225 aa20.39■□□□□ 0.85
SNX1-206ENST00000559389 POLR3HQ9Y535 204 aaPredicted RBP20.39■□□□□ 0.85
SNX1-206ENST00000559389 A0A1W2PQ72 361 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 SLCO1B7G3V0H7 640 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 SOCS6O14544 535 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 HDAC3O15379 428 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 SEC22BO75396 215 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 C8orf89P0DMQ9 161 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 MAOAP21397 527 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 HK2P52789 917 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 HSD17B7P56937 341 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 CXADRP78310 365 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 BTG2P78543 158 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 ZNF763Q0D2J5 394 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 TMEM205Q6UW68 189 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 LANCL3Q6ZV70 420 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 PLPP5Q8NEB5 264 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 PIWIL2Q8TC59 973 aaKnown RBP20.38■□□□□ 0.85
SNX1-206ENST00000559389 THAP4Q8WY91 577 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 IP6K3Q96PC2 410 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 MESP1Q9BRJ9 268 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 NUF2Q9BZD4 464 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 MEAF6Q9HAF1 191 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 GIMAP2Q9UG22 337 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 CLDN16Q9Y5I7 305 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 ACACBO00763 2458 aa20.38■□□□□ 0.85
SNX1-206ENST00000559389 LOC102723996A0A087X1L8 192 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 GNG14A0A1W2PPG7 69 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 CLDN4O14493 209 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 PRMT3O60678 531 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 GUCY1B2O75343 617 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 PRKRAO75569 313 aaKnown RBP20.37■□□□□ 0.85
SNX1-206ENST00000559389 MYO1DO94832 1006 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 ANXA4P09525 319 aaPredicted RBP20.37■□□□□ 0.85
SNX1-206ENST00000559389 KITP10721 976 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 GSTM5P46439 218 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 ATP1A4Q13733 1029 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 GALNTL6Q49A17 601 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 ATP6AP1LQ52LC2 224 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 RFTN2Q52LD8 501 aaPredicted RBP20.37■□□□□ 0.85
SNX1-206ENST00000559389 NDUFAF5Q5TEU4 345 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 FAAH2Q6GMR7 532 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 NOXRED1Q6NXP6 359 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 KIRREL2Q6UWL6 708 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 FAM47EQ6ZV65 393 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 TUBGCP3Q96CW5 907 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 PPP1R36Q96LQ0 422 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 RPF2Q9H7B2 306 aaKnown RBP20.37■□□□□ 0.85
SNX1-206ENST00000559389 WDR41Q9HAD4 459 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 NECTIN3Q9NQS3 549 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 VTI1BQ9UEU0 232 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 POLHQ9Y253 713 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 DLGAP4Q9Y2H0 992 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 TMED5Q9Y3A6 229 aa20.37■□□□□ 0.85
SNX1-206ENST00000559389 TGFBR3LH3BV60 316 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 PEX11AO75192 247 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 PRR35P0CG20 571 aa20.36■□□□□ 0.85
SNX1-206ENST00000559389 ACPPP15309 386 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms