RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C9P02748 559 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 C8orf89P0DMQ9 161 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ERGP11308 486 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 HNRNPFP52597 415 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 RAB8AP61006 207 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 PRDX1Q06830 199 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 BNIP3Q12983 259 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 DGCR6Q14129 220 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 SKIV2LQ15477 1246 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 TEAD4Q15561 434 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 UAP1L1Q3KQV9 507 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ZNF793Q6ZN11 406 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 NLGN4XQ8N0W4 816 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 SLC5A8Q8N695 610 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 KIAA1958Q8N8K9 716 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ABHD11Q8NFV4 315 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR4E2Q8NGC2 313 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR5D16Q8NGK9 328 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR13F1Q8NGS4 319 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 OR8K5Q8NH50 307 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 TSACCQ96A04 125 aaPredicted RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 ELSPBP1Q96BH3 223 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 PDXPQ96GD0 296 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 NIPSNAP1Q9BPW8 284 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 WFDC6Q9BQY6 131 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 C1QTNF2Q9BXJ5 285 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 YTHDF1Q9BYJ9 559 aaKnown RBP10.11□□□□□ -0.79
CUX1-217ENST00000558836 NLNQ9BYT8 704 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ANKRA2Q9H9E1 313 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 ACSL5Q9ULC5 683 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 LYVE1Q9Y5Y7 322 aa10.11□□□□□ -0.79
CUX1-217ENST00000558836 A0A1W2PQF6 199 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 PCDH17O14917 1159 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ERAL1O75616 437 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 PCSK2P16519 638 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 NTSR1P30989 418 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 BCL6P41182 706 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 SSR2P43308 183 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 RAB28P51157 221 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 LSM3P62310 102 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 SNRPNP63162 240 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 NPRL3Q12980 569 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ENPP2Q13822 863 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 EXOC3L2Q2M3D2 409 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 FLCNQ8NFG4 579 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 SLC38A5Q8WUX1 472 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 GTPBP3Q969Y2 492 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 DPH7Q9BTV6 452 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 APOOQ9BUR5 198 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 KLHL25Q9H0H3 589 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 RHBGQ9H310 441 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 WASH6PQ9NQA3 447 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 SLC6A14Q9UN76 642 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 SPTBP11277 2137 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 TICRRQ7Z2Z1 1910 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 HAT1O14929 419 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 PCDHGA12O60330 932 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 CPNE6O95741 557 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 DCKP27707 260 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ACSL1P33121 698 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 EIF2DP41214 584 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 DSTNP60981 165 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 EMX1Q04741 257 aaPredicted RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 EEF1A2Q05639 463 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 ARHGAP19Q14CB8 494 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ENPP7Q6UWV6 458 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ZNF540Q8NDQ6 660 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 MRPL38Q96DV4 380 aaKnown RBP10.1□□□□□ -0.79
CUX1-217ENST00000558836 CLDND1Q9NY35 253 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 TBC1D29Q9UFV1 150 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 MSRAQ9UJ68 235 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 FBXW2Q9UKT8 454 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 ICKQ9UPZ9 632 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 PCDHGB3Q9Y5G1 929 aa10.1□□□□□ -0.79
CUX1-217ENST00000558836 WDFY4Q6ZS81 3184 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 TRBC2A0A5B9 178 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PGRMC2O15173 223 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PDPK1O15530 556 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 ERI3O43414 337 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 UGT2B11O75310 529 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 JRKO75564 520 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 CXCR2P25025 360 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 ALDH4A1P30038 563 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 IDH2P48735 452 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 ENTPD1P49961 510 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 REEP5Q00765 189 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 HEPACAMQ14CZ8 416 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 NPTX1Q15818 432 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 RFX4Q33E94 735 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 IFI44LQ53G44 452 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 KIAA1614Q5VZ46 1190 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PIWIL3Q7Z3Z3 882 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 C6orf120Q7Z4R8 191 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 NUDT13Q86X67 352 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 RBM45Q8IUH3 476 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 RGMAQ96B86 450 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 MRPS30Q9NP92 439 aaKnown RBP10.09□□□□□ -0.79
CUX1-217ENST00000558836 MAPRE3Q9UPY8 281 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 PADI2Q9Y2J8 665 aa10.09□□□□□ -0.79
CUX1-217ENST00000558836 SNX5Q9Y5X3 404 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms