RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SUV39H1O43463 412 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 ALBP02768 609 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 ARAFP10398 606 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 THRBP10828 461 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 DCTP40126 519 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 BLKP51451 505 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 RGS1Q08116 209 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 SLAMF1Q13291 335 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 GALNT10Q86SR1 603 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 DCP2Q8IU60 420 aaKnown RBP25■■□□□ 1.59
CCDC88C-205ENST00000553403 THAP11Q96EK4 314 aa25■■□□□ 1.59
CCDC88C-205ENST00000553403 IFT80Q9P2H3 777 aaPredicted RBP25■■□□□ 1.59
CCDC88C-205ENST00000553403 DPM1O60762 260 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 GCM2O75603 506 aaPredicted RBP24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 SNAP29O95721 258 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 STATHP02808 62 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 IST1P53990 364 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 EPS8Q12929 822 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 OR2T5Q6IEZ7 315 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 VN1R4Q7Z5H5 301 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 VTCN1Q7Z7D3 282 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 ASPGQ86U10 573 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 OR2T29Q8NH02 315 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 OR8K5Q8NH50 307 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 GAL3ST3Q96A11 431 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 MACROD1Q9BQ69 325 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 SYNPO2LQ9H987 977 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 SIRT3Q9NTG7 399 aaPredicted RBP24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 BAG5Q9UL15 447 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 KLK4Q9Y5K2 254 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 SNX8Q9Y5X2 465 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 FANCMQ8IYD8 2048 aa24.99■■□□□ 1.59
CCDC88C-205ENST00000553403 MUC3AQ02505 3323 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 OR6C74A6NCV1 312 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 E2F6O75461 281 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 H6PDO95479 791 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 CTSEP14091 401 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 RXRGP48443 463 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 CRYBA2P53672 197 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 STARD6P59095 220 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 PPP2R2BQ00005 443 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 CDK6Q00534 326 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 RELAQ04206 551 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 UBXN2BQ14CS0 331 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 SHQ1Q6PI26 577 aaKnown RBP24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 USP51Q70EK9 711 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 TAF8Q7Z7C8 310 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 NFKBIDQ8NI38 313 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 SHDQ96IW2 340 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 DOHHQ9BU89 302 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 SLC35C2Q9NQQ7 365 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 LYARQ9NX58 379 aaKnown RBP24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 ZSCAN32Q9NX65 697 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 MYRFQ9Y2G1 1151 aa24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 MAGED1Q9Y5V3 778 aaPredicted RBP24.98■■□□□ 1.59
CCDC88C-205ENST00000553403 H3BNH8 94 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 POLR2CP19387 275 aaPredicted RBP24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 DSTNP60981 165 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 SELENOWP63302 87 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 FBXO42Q6P3S6 717 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 FIGLAQ6QHK4 219 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 SPESP1Q6UW49 350 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 PARGQ86W56 976 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 PJA1Q8NG27 643 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 RLN3Q8WXF3 142 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 TPSD1Q9BZJ3 242 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 PCED1AQ9H1Q7 454 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 C5AR2Q9P296 337 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 WNT16Q9UBV4 365 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 ABCG2Q9UNQ0 655 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 ANGPT4Q9Y264 503 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 C2orf74A8MZ97 194 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 IFNA14P01570 189 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 GNAO1P09471 354 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 CASP9P55211 416 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 KCNJ10P78508 379 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 ZP2Q05996 745 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 APOFQ13790 326 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 CRB2Q5IJ48 1285 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 FAM180BQ6P0A1 224 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 TMEM179BQ7Z7N9 219 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 PATL1Q86TB9 770 aaKnown RBP24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 TRIM73Q86UV7 250 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 RBM12BQ8IXT5 1001 aaKnown RBP24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 FRMD1Q8N878 549 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 ZFP28Q8NHY6 868 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 TM4SF19Q96DZ7 209 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 SLC6A18Q96N87 628 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 NELL2Q99435 816 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 GABARAPL1Q9H0R8 117 aa24.97■■□□□ 1.59
CCDC88C-205ENST00000553403 A0A1W2PR48 441 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 GSAPA4D1B5 854 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 KRBA1A5PL33 1030 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 FAM170BA6NMN3 283 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 TMEM229AB2RXF0 380 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 NTSP30990 170 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 VLDLRP98155 873 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 HSPB3Q12988 150 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 ZNF542PQ5EBM4 170 aa24.96■■□□□ 1.59
CCDC88C-205ENST00000553403 FCRL6Q6DN72 434 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms