RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PGAM1P18669 254 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 STXBP1P61764 594 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 RNF4P78317 190 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SLC10A1Q14973 349 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 FLYWCH1Q4VC44 716 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 WLSQ5T9L3 541 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 ADGRD1Q6QNK2 874 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SEM1Q6ZVN7 128 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 ZNF595Q8IYB9 648 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 KLHDC8AQ8IYD2 350 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 MORN4Q8NDC4 146 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SARAFQ96BY9 339 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SMR3AQ99954 134 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SH3GL2Q99962 352 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SACM1LQ9NTJ5 587 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 TRMT1Q9NXH9 659 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 B4GALT7Q9UBV7 327 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 CBLCQ9ULV8 474 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 CLCA3PQ9Y6N3 262 aa16.46■□□□□ 0.23
CLSTN3-214ENST00000542663 SYT5O00445 386 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 IFNA16P05015 189 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 UQCRC1P31930 480 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 DGKQP52824 942 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 LIM2P55344 173 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 LTBQ06643 244 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 PAMR1Q6UXH9 720 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 GALNT7Q86SF2 657 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 NAXEQ8NCW5 288 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 WFDC11Q8NEX6 87 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 GOT1L1Q8NHS2 421 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 PDLIM5Q96HC4 596 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 SGCZQ96LD1 299 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 OR8D2Q9GZM6 311 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 LDAHQ9H6V9 325 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 ALKBH4Q9NXW9 302 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 VTI1BQ9UEU0 232 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 DAPP1Q9UN19 280 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 KCNE2Q9Y6J6 123 aa16.45■□□□□ 0.22
CLSTN3-214ENST00000542663 TRGV5A0A0B4J1U4 118 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 B3GALT2O43825 422 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 HCN1O60741 890 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 CTNSO60931 367 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 RFPL3SP0C7P2 107 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 C1GALT1C1LP0DN25 315 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 GABRA1P14867 456 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 CERS1P27544 350 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 PIGAP37287 484 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 C18orf21Q32NC0 220 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 ADPRMQ3LIE5 342 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 TMIGD1Q6UXZ0 262 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 SLCO4C1Q6ZQN7 724 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 Q71RC1 249 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 VN1R5Q7Z5H4 357 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 CAMKMTQ7Z624 323 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 GPATCH11Q8N954 259 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 SPC24Q8NBT2 197 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 OR8K3Q8NH51 312 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 OR14A16Q8NHC5 309 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 SLC2A12Q8TD20 617 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 DAZLQ92904 295 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 ALOXE3Q9BYJ1 711 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF703Q9H7S9 590 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 PLAC1Q9HBJ0 212 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 SH2D2AQ9NP31 389 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 LZTFL1Q9NQ48 299 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 MRPS33Q9Y291 106 aaKnown RBP16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 VWA7Q9Y334 891 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 FBN3Q75N90 2809 aa16.44■□□□□ 0.22
CLSTN3-214ENST00000542663 KDM4EB2RXH2 506 aaPredicted RBP16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 FAM47E-STBD1D6RA91 191 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 CDC7O00311 574 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 ATE1O95260 518 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 P04436 131 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 PEX19P40855 299 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 PLA2G16P53816 162 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 MSS51Q4VC12 460 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 ADNP2Q6IQ32 1131 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 POMZP3Q6PJE2 187 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 OPN5Q6U736 354 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 BIVMQ86UB2 503 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 IGDCC3Q8IVU1 814 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 ULK2Q8IYT8 1036 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 OR2L5Q8NG80 312 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 FAM222BQ8WU58 562 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 CCT6BQ92526 530 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 MAGOHBQ96A72 148 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 CERS2Q96G23 380 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 SERINC2Q96SA4 455 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 EXO5Q9H790 373 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 EDARQ9UNE0 448 aa16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-214ENST00000542663 NPEPPSL1A6NEC2 478 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 HSPB2A8KAH6 182 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 C17orf105B2RV13 164 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 LDB3O75112 727 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ETHE1O95571 254 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 RAF1P04049 648 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ZNF37AP17032 561 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 GDF5P43026 501 aa16.42■□□□□ 0.22
CLSTN3-214ENST00000542663 ASCL1P50553 236 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms