RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 USP30Q70CQ3 517 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 DHRS1Q96LJ7 313 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 TEFMQ96QE5 360 aaKnown RBP13.11□□□□□ -0.31
RTN3-210ENST00000540798 TWSG1Q9GZX9 223 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ADNPQ9H2P0 1102 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 XKR8Q9H6D3 395 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 KIR3DX1Q9H7L2 352 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 NEUROD4Q9HD90 331 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 TIMMDC1Q9NPL8 285 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 TMEM9Q9P0T7 183 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 PCDHGB1Q9Y5G3 927 aa13.11□□□□□ -0.31
RTN3-210ENST00000540798 ATG2BQ96BY7 2078 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 LRP4O75096 1905 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 RECKO95980 971 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 RRM2P31350 389 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 PRIM2P49643 509 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 TPD52P55327 224 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 DSTNP60981 165 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 ABATP80404 500 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 GANCQ8TET4 914 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 CLIP3Q96DZ5 547 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 PSD2Q9BQI7 771 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 NLNQ9BYT8 704 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 FANCEQ9HB96 536 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 FGF22Q9HCT0 170 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 ACSS1Q9NUB1 689 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 TMEM184CQ9NVA4 438 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 SCHIP1Q9P0W5 487 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 A8MVJ9 347 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 H3BMQ9 156 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 CACNB4O00305 520 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 ADAMDEC1O15204 470 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 TNRC18O15417 2968 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 B4GALT2O60909 372 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 DNAJB5O75953 348 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 HOXB2P14652 356 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 PCMT1P22061 227 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 BCL6P41182 706 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 LIMS1P48059 325 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 TMED1Q13445 227 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 NANOGNBQ7Z5D8 188 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 ZNF605Q86T29 641 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 AMER3Q8N944 861 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 TTC29Q8NA56 475 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 APOBEC4Q8WW27 367 aaKnown RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 COG8Q96MW5 612 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 ZNF300Q96RE9 604 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 RIBC2Q9H4K1 309 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 LIN28AQ9H9Z2 209 aaKnown RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 FZD3Q9NPG1 666 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 PRDM8Q9NQV8 689 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 TEX10Q9NXF1 929 aaPredicted RBP13.1□□□□□ -0.31
RTN3-210ENST00000540798 ANGPT4Q9Y264 503 aa13.1□□□□□ -0.31
RTN3-210ENST00000540798 SNRNP200O75643 2136 aaKnown RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 PRSS38A1L453 326 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 PRR23AA6NEV1 266 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 OR52A4PA6NMU1 304 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 KLF8O95600 359 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 OPN1SWP03999 348 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 EEF1B2P24534 225 aaKnown RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 SOAT1P35610 550 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 NEDD8Q15843 81 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 KIAA1614Q5VZ46 1190 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 LAIR1Q6GTX8 287 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 NCCRP1Q6ZVX7 275 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 TSPYL5Q86VY4 417 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 KRT84Q9NSB2 600 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 GPSM3Q9Y4H4 160 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 SPTBN5Q9NRC6 3674 aaKnown RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3DA0A087WVF3 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3IA0A087WXS9 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3EA0A087X179 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3KA0A087X1G2 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3FA6NER0 549 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 C10orf142B7Z368 130 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3LB9A6J9 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 IFNA14P01570 189 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3HP0C7X1 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 DRD2P14416 443 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 XCR1P46094 333 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3GQ6DHY5 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3CQ6IPX1 549 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 WASH2PQ6VEQ5 465 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 ZNF793Q6ZN11 406 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 B3GNT8Q7Z7M8 397 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 ARMC8Q8IUR7 673 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 CCDC71Q8IV32 467 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 TBC1D3Q8IZP1 549 aaPredicted RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 DENND6BQ8NEG7 585 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 OR2L3Q8NG85 312 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 GEMIN6Q8WXD5 167 aaKnown RBP13.09□□□□□ -0.31
RTN3-210ENST00000540798 LZICQ8WZA0 190 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 MUL1Q969V5 352 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 TRPV5Q9NQA5 729 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 EHD3Q9NZN3 535 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 HEBP2Q9Y5Z4 205 aa13.09□□□□□ -0.31
RTN3-210ENST00000540798 C4orf51C9J302 202 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 ITIH1P19827 911 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 MATN1P21941 496 aa13.08□□□□□ -0.31
RTN3-210ENST00000540798 AHRP35869 848 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms